* feat: let owners leave chosen files unredacted (#941)
Redacting self-citations in a bibliography reveals which papers are the
authors' own. Owners can now pick files whose content is served as
written; file names are still redacted. Patterns follow .gitignore rules.
The form gets a file picker fed by GitHub's tree API, and the terms box
grows with its content and only warns about regex symbols that can stop a
term from matching.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix: honour !patterns, keep picked braces literal, preview unredacted README
- Patterns now apply in order and the last match wins, as in .gitignore,
so "*.bib" then "!private.bib" excludes private.bib instead of
preserving every other file.
- Picked paths escape glob characters, braces included, with a
backslash; "[{]" did not survive brace expansion.
- The README preview drops terms when the README is an unredacted file,
and refreshes when the list changes.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix: keep rule order when deduplicating unredacted-file patterns
Rules apply in order and the last match wins, so dedupe keeps the last
copy of a repeated pattern instead of the first. The picker also keeps a
plain path in its place when it follows another rule, rather than moving
it to the front as a pick.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix: apply unredacted-file rules to folders, as in .gitignore
A rule that matches a folder now covers every file inside it, so "*.bib"
then "!private" keeps private/refs.bib redacted. A trailing "/" limits a
rule to folders.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix: folder unchecks win over broad rules; accept short commit hashes
- Unchecking a folder that a broader rule such as "*.bib" still covers
appends a "!/folder/" exclusion, so its files really go back to being
redacted.
- The tree endpoint accepts the 6+ character hashes the commit field
allows and resolves them to a full SHA before reading the tree.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix: picker counts folder rules exactly as the server does
Rules ending in "/" stay patterns instead of being read as picked files,
and the checkboxes now run the saved rule list (picks, then patterns)
through the server's matcher, so the dialog cannot show files as
redacted that the server leaves unredacted.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix: insert escaped terms literally in "Match as written"
String.replace expanded "$&", "$'" and "$1" in the term, so the fix
could corrupt the line. Splice by index instead.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
* chore(deps): bump uuid and bullmq
Removes [uuid](https://github.com/uuidjs/uuid). It's no longer used after updating ancestor dependency [bullmq](https://github.com/taskforcesh/bullmq). These dependencies need to be updated together.
Removes `uuid`
Updates `bullmq` from 2.4.0 to 5.76.5
- [Release notes](https://github.com/taskforcesh/bullmq/releases)
- [Commits](https://github.com/taskforcesh/bullmq/compare/v2.4.0...v5.76.5)
---
updated-dependencies:
- dependency-name: bullmq
dependency-version: 5.76.5
dependency-type: direct:production
- dependency-name: uuid
dependency-version:
dependency-type: indirect
...
Signed-off-by: dependabot[bot] <support@github.com>
* fix(bullmq): adapt isRunning + getJobs typing for v5 API
Worker.isRunning became a method (was a property in v2), and
Queue.getJobs now requires a mutable JobType[] (was string[]).
* clean up
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: tdurieux <durieuxthomas@hotmail.com>
Co-authored-by: Thomas Durieux <5577568+tdurieux@users.noreply.github.com>
Files like .jsonl that mime-types doesn't know fell through to
application/octet-stream and rendered as "Unsupported binary file" in
the viewer. Replace istextorbinary with isbinaryfile for content-based
detection, and use mime-types for name-based classification with a
textual application/* allowlist.
The streaming transformer now defers classification when the name is
inconclusive and sniffs the first chunk before emitting "transform",
so route.ts and AnonymizedFile.ts get a content-aware Content-Type.
Whitelists .jsonl and .ndjson to short-circuit dataset files.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
