diff --git a/erpnext/accounts/doctype/payment_entry/payment_entry.js b/erpnext/accounts/doctype/payment_entry/payment_entry.js
index 3a89ce8cd12..6be0920d2a8 100644
--- a/erpnext/accounts/doctype/payment_entry/payment_entry.js
+++ b/erpnext/accounts/doctype/payment_entry/payment_entry.js
@@ -1111,7 +1111,7 @@ frappe.ui.form.on('Payment Entry', {
 
 			$.each(tax_fields, function(i, fieldname) { tax[fieldname] = 0.0; });
 
-			frm.doc.paid_amount_after_tax = frm.doc.paid_amount;
+			frm.doc.paid_amount_after_tax = frm.doc.base_paid_amount;
 		});
 	},
 
@@ -1202,7 +1202,7 @@ frappe.ui.form.on('Payment Entry', {
 			}
 
 			cumulated_tax_fraction += tax.tax_fraction_for_current_item;
-			frm.doc.paid_amount_after_tax = flt(frm.doc.paid_amount/(1+cumulated_tax_fraction))
+			frm.doc.paid_amount_after_tax = flt(frm.doc.base_paid_amount/(1+cumulated_tax_fraction))
 		});
 	},
 
@@ -1234,6 +1234,7 @@ frappe.ui.form.on('Payment Entry', {
 		frm.doc.total_taxes_and_charges = 0.0;
 		frm.doc.base_total_taxes_and_charges = 0.0;
 
+		let company_currency = frappe.get_doc(":Company", frm.doc.company).default_currency;
 		let actual_tax_dict = {};
 
 		// maintain actual tax rate based on idx
@@ -1254,8 +1255,8 @@ frappe.ui.form.on('Payment Entry', {
 				}
 			}
 
-			tax.tax_amount = current_tax_amount;
-			tax.base_tax_amount = tax.tax_amount * frm.doc.source_exchange_rate;
+			// tax accounts are only in company currency
+			tax.base_tax_amount = current_tax_amount;
 			current_tax_amount *= (tax.add_deduct_tax == "Deduct") ? -1.0 : 1.0;
 
 			if(i==0) {
@@ -1264,9 +1265,29 @@ frappe.ui.form.on('Payment Entry', {
 				tax.total = flt(frm.doc["taxes"][i-1].total + current_tax_amount, precision("total", tax));
 			}
 
-			tax.base_total = tax.total * frm.doc.source_exchange_rate;
-			frm.doc.total_taxes_and_charges += current_tax_amount;
-			frm.doc.base_total_taxes_and_charges += current_tax_amount * frm.doc.source_exchange_rate;
+			// tac accounts are only in company currency
+			tax.base_total = tax.total
+
+			// calculate total taxes and base total taxes
+			if(frm.doc.payment_type == "Pay") {
+				// tax accounts only have company currency
+				if(tax.currency != frm.doc.paid_to_account_currency) {
+					//total_taxes_and_charges has the target currency. so using target conversion rate
+					frm.doc.total_taxes_and_charges += flt(current_tax_amount / frm.doc.target_exchange_rate);
+
+				} else {
+					frm.doc.total_taxes_and_charges += current_tax_amount;
+				}
+			} else if(frm.doc.payment_type == "Receive") {
+				if(tax.currency != frm.doc.paid_from_account_currency) {
+					//total_taxes_and_charges has the target currency. so using source conversion rate
+					frm.doc.total_taxes_and_charges += flt(current_tax_amount / frm.doc.source_exchange_rate);
+				} else {
+					frm.doc.total_taxes_and_charges += current_tax_amount;
+				}
+			}
+
+			frm.doc.base_total_taxes_and_charges += tax.base_tax_amount;
 
 			frm.refresh_field('taxes');
 			frm.refresh_field('total_taxes_and_charges');
diff --git a/erpnext/accounts/doctype/payment_entry/payment_entry.py b/erpnext/accounts/doctype/payment_entry/payment_entry.py
index b1976ebae65..904d7af757f 100644
--- a/erpnext/accounts/doctype/payment_entry/payment_entry.py
+++ b/erpnext/accounts/doctype/payment_entry/payment_entry.py
@@ -944,6 +944,13 @@ class PaymentEntry(AccountsController):
 			)
 
 			if not d.included_in_paid_amount:
+				if get_account_currency(payment_account) != self.company_currency:
+					if self.payment_type == "Receive":
+						exchange_rate = self.target_exchange_rate
+					elif self.payment_type in ["Pay", "Internal Transfer"]:
+						exchange_rate = self.source_exchange_rate
+					base_tax_amount = flt((tax_amount / exchange_rate), self.precision("paid_amount"))
+
 				gl_entries.append(
 					self.get_gl_dict(
 						{
@@ -1059,7 +1066,7 @@ class PaymentEntry(AccountsController):
 			for fieldname in tax_fields:
 				tax.set(fieldname, 0.0)
 
-		self.paid_amount_after_tax = self.paid_amount
+		self.paid_amount_after_tax = self.base_paid_amount
 
 	def determine_exclusive_rate(self):
 		if not any((cint(tax.included_in_paid_amount) for tax in self.get("taxes"))):
@@ -1078,7 +1085,7 @@ class PaymentEntry(AccountsController):
 
 			cumulated_tax_fraction += tax.tax_fraction_for_current_item
 
-		self.paid_amount_after_tax = flt(self.paid_amount / (1 + cumulated_tax_fraction))
+		self.paid_amount_after_tax = flt(self.base_paid_amount / (1 + cumulated_tax_fraction))
 
 	def calculate_taxes(self):
 		self.total_taxes_and_charges = 0.0
@@ -1101,7 +1108,7 @@ class PaymentEntry(AccountsController):
 					current_tax_amount += actual_tax_dict[tax.idx]
 
 			tax.tax_amount = current_tax_amount
-			tax.base_tax_amount = tax.tax_amount * self.source_exchange_rate
+			tax.base_tax_amount = current_tax_amount
 
 			if tax.add_deduct_tax == "Deduct":
 				current_tax_amount *= -1.0
@@ -1115,14 +1122,20 @@ class PaymentEntry(AccountsController):
 					self.get("taxes")[i - 1].total + current_tax_amount, self.precision("total", tax)
 				)
 
-			tax.base_total = tax.total * self.source_exchange_rate
+			tax.base_total = tax.total
 
 			if self.payment_type == "Pay":
-				self.base_total_taxes_and_charges += flt(current_tax_amount / self.source_exchange_rate)
-				self.total_taxes_and_charges += flt(current_tax_amount / self.target_exchange_rate)
-			else:
-				self.base_total_taxes_and_charges += flt(current_tax_amount / self.target_exchange_rate)
-				self.total_taxes_and_charges += flt(current_tax_amount / self.source_exchange_rate)
+				if tax.currency != self.paid_to_account_currency:
+					self.total_taxes_and_charges += flt(current_tax_amount / self.target_exchange_rate)
+				else:
+					self.total_taxes_and_charges += current_tax_amount
+			elif self.payment_type == "Receive":
+				if tax.currency != self.paid_from_account_currency:
+					self.total_taxes_and_charges += flt(current_tax_amount / self.source_exchange_rate)
+				else:
+					self.total_taxes_and_charges += current_tax_amount
+
+			self.base_total_taxes_and_charges += tax.base_tax_amount
 
 		if self.get("taxes"):
 			self.paid_amount_after_tax = self.get("taxes")[-1].base_total