diff --git a/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py b/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
index 08f2827f8fb..e678f9875a3 100644
--- a/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
+++ b/erpnext/stock/doctype/stock_reconciliation/stock_reconciliation.py
@@ -595,10 +595,6 @@ class StockReconciliation(StockController):
 					)
 				)
 
-			# validate warehouse
-			if not frappe.db.get_value("Warehouse", row.warehouse):
-				self.validation_messages.append(_get_msg(row_num, _("Warehouse not found in the system")))
-
 			# if both not specified
 			if row.qty in ["", None] and row.valuation_rate in ["", None]:
 				self.validation_messages.append(