diff --git a/erpnext/setup/doctype/company/delete_company_transactions.py b/erpnext/setup/doctype/company/delete_company_transactions.py
index cb735c12bf8..f7334b1e6d1 100644
--- a/erpnext/setup/doctype/company/delete_company_transactions.py
+++ b/erpnext/setup/doctype/company/delete_company_transactions.py
@@ -22,7 +22,7 @@ def delete_company_transactions(company_name):
 
 	for doctype in frappe.db.sql_list("""select parent from
 		tabDocField where fieldtype='Link' and options='Company'"""):
-		if doctype not in ("Account", "Cost Center", "Warehouse", "Budget Detail", "Party Account"):
+		if doctype not in ("Account", "Cost Center", "Warehouse", "Budget Detail", "Party Account", "Employee"):
 			delete_for_doctype(doctype, company_name)
 			
 	# Clear notification counts