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docs: update project documentation for v1.68.1.0
README: document canonical-only hook registration + the prune-stale self-heal in the setup hooks section; expand the manual-uninstall note to cover every gstack hook identity, not just timeline-stop-hook. CONTRIBUTING: record PT_EXPLICIT provenance (Conductor auto-opt-in fires only on the true silent fall-through) and the heal-first repair exception in the dev-setup paragraph. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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@@ -430,7 +430,7 @@ If you're using [Conductor](https://conductor.build) to run multiple Claude Code
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When Conductor creates a new workspace, `bin/dev-setup` runs automatically. It detects the main worktree (via `git worktree list`), copies your `.env` so API keys carry over, and sets up dev mode — no manual steps needed.
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`bin/dev-setup` runs `./setup` fully non-interactively (it passes `--plan-tune-hooks=prompt` and closes stdin), so a forwarded Conductor TTY can never hang on a hidden setup prompt. It also never installs the plan-tune Claude Code hooks, which means a throwaway workspace can't rewrite your global `~/.claude/settings.json` to point at an ephemeral worktree path. To install the plan-tune hooks deliberately, run `./setup --plan-tune-hooks` outside dev-setup (or `gstack-config set plan_tune_hooks yes`).
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`bin/dev-setup` runs `./setup` fully non-interactively (it passes `--plan-tune-hooks=prompt` and closes stdin), so a forwarded Conductor TTY can never hang on a hidden setup prompt. It also never installs the plan-tune Claude Code hooks, which means a throwaway workspace can't rewrite your global `~/.claude/settings.json` to point at an ephemeral worktree path. To install the plan-tune hooks deliberately, run `./setup --plan-tune-hooks` outside dev-setup (or `gstack-config set plan_tune_hooks yes`). The explicit flag counts as an explicit decision: setup's Conductor auto-opt-in for AskUserQuestion hooks fires only on the true silent fall-through (no flag, no `GSTACK_PLAN_TUNE_HOOKS` env var, no `plan_tune_hooks` key literally present in config, checked via `gstack-config has`), so it can never override dev-setup into installing hooks. One stated repair exception: setup's heal-first pass (`gstack-settings-hook prune-stale --repoint`) may prune dead gstack hook entries and re-point existing ones at the stable `~/.claude/skills/gstack` install. That is strictly convergent repair, never a new registration, and registration itself is canonical-only, so an ephemeral tree path can never be baked into settings.json.
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**First-time setup:** Put your `ANTHROPIC_API_KEY` in `.env` in the main repo (see `.env.example`). Every Conductor workspace inherits it automatically.
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