Commit Graph
9 Commits
Author SHA1 Message Date
Garry Tanandcapy-ai[bot] 9dc1dfb729 v1.91.227.0 fix(windows): shell bins pass NUL as Bun's empty config when MSYS path conversion is off (#3415) (#3431)
* fix(windows): shell bins pass NUL as Bun's empty config when MSYS path conversion is off (#3415)

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

* fix(windows): detect Git Bash/MSYS2/Cygwin from OSTYPE, as gstack-doctor does, so uname stubs in setup fixtures stay untouched

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

* fix: pre-landing review fixes (#3415)

- Choose NUL only when cygpath is also on PATH, so an OSTYPE=msys inherited
  by a POSIX bash keeps /dev/null instead of a cwd-relative NUL file.
- gstack-developer-profile --log-session reports a Bun failure instead of
  skipping it as invalid input, like gstack-timeline-log.
- learnings-injection tests check that their anchored bun -e block exists.
- CHANGELOG names the callers this fix does not cover; curation reason fixed.

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

* fix: pre-landing review fixes, cycle 2 (#3415)

- timeline-log and developer-profile validators print their verdict; any
  non-zero Bun exit is a reported failure (a Bun crash on Windows exits 3).
- timeline-log keeps the original event when ts stamping fails.
- The definition ratchet scopes a local GSTACK_BUN_CONFIG to its function.
- The shell-bins fixture clears its preload marker per test.
- CHANGELOG states the callers that discard the report and the Bun 1.3.x case.

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

* docs: CHANGELOG notes Bun 1.3.10 evidence and remaining literal /dev/null callers (#3415)

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

---------

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>
2026-10-26 04:32:27 +00:00
Garry Tanandcapy-ai[bot] 4c6fa89cdc v1.91.159.0 security: gstack's Bun entry points ignore the audited repo's .env and bunfig.toml (S1) (#3312)
* security: isolate every gstack Bun entry point from the audited checkout's .env and bunfig.toml

Bun auto-loads .env, .env.local and .env.<NODE_ENV> from its cwd and runs a
cwd bunfig.toml preload before the program starts. gstack runs inside the repo
it audits, so a committed .env could steer state roots, the claude binary or
spend caps, and a bunfig preload ran arbitrary code in every bin and hook.

Every bun shebang, shell and skill caller, TypeScript spawn and compiled build
now disables both (--no-env-file --config=/dev/null, bunIsolationArgs(),
--no-compile-autoload-dotenv/bunfig), with a ratchet and hostile-fixture
regressions.

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

* test: name the directly executed scripts in the isolation ratchet

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

* test: follow the isolation flags in touchfiles, copy lists, recipe assertions and the harness pin

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

* fix: keep browse/src/bun-child-config.ts unchanged so the native cookie qualification still binds

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

* fix(windows): the empty bunfig outlives its process so the timeline hook's detached repair child can read it

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

* v1.91.159.0 security: gstack's Bun entry points ignore the audited repo's .env and bunfig.toml (S1)

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

* test: plan-mode render pattern accepts the isolation flags

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>

---------

Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>
2026-10-20 00:24:28 +00:00
+44 2db0b3adc8 v1.91.19.0 fix: severe fix wave (truthful gates, no lost memory, every host finds gstack) (#3025)
* docs: approved severe fix wave plan (Oct 2026)

* D0: keep a project's .env and bunfig.toml out of compiled binaries and daemon children

Compiled binaries are built with --no-compile-autoload-dotenv and
--no-compile-autoload-bunfig; the browse server and terminal agent are
spawned with --no-env-file and an empty config, so a repo's .env cannot set
GSTACK_CHROMIUM_NO_SANDBOX and a bunfig preload cannot run code in them.
Verified on Bun 1.4.0.

* A9: --no-write is a dry run and leaves ingest state untouched

--no-write stamped every prepared page ingested_at and saved state, so a
later real run skipped those pages forever. It now prepares and reports
pages without importing or changing the state file.

Tests that used GSTACK_MEMORY_INGEST_NO_WRITE / --no-write to seed state
move to an explicit seam (a fake gbrain that accepts every staged page),
because the --no-write contract deliberately changes.

* H #2885 #2827: vector geometry is not phone or card PII

pii.phone.e164 accepts "." as a group separator, so a single float
(viewBox="0 0 581.66796875 ...") and a run of path coordinates
("37.6188 101.694") read as phone numbers. pii.cc's \b stops at a decimal
point, so the long fraction of an .excalidraw float is a Luhn candidate.
Excalidraw's seed/versionNonce/updated integers read as bare phone numbers.
A rendered /diagram triplet raised 18 (svg) and 97 (excalidraw) MEDIUM
findings on main; it now raises none.

- looksLikeDecimalCoordinates (ported from #2885, extended to a single
  decimal and refusing a leading "+", the E.164 marker)
- insideDecimalNumber: a cc span glued to "<digit>." or ".<digit>"
- isNumericMetadataValue: an unquoted JSON value under a seed, nonce or
  timestamp key; the same digits under "phone" still report

Controls: E.164 in prose, dotted and spaced phones, "+"-prefixed runs,
"phone"/"contact" JSON numbers, Luhn-valid cards in prose and at sentence end.

Co-authored-by: Lewis <lewispeel@hotmail.com>

* D1: pin the terminal-agent /ws Origin to the gstack extension (#1324)

GSTACK_EXTENSION_ID moves to browse/src/extension-id.ts, shared by
/extension-token and the terminal agent's /ws gate. /ws now returns 403 for
every origin except the pinned extension. Forks override the ID with
gstack-config set browse_extension_id <id>, honored by both routes; the
BROWSE_EXTENSION_ID env var is no longer read. Test sites that used fake
extension IDs now use the pinned origin.

* H #2899: env.kv skips a function call assigned to a credential name

`session = _FlakySession(...)`, `token = make_token(user, ...)` and
`password = getpass.getpass()` raised env.kv MEDIUM, which blocks the
fail-closed decision log. The exemption needs the line's evidence, not the
span's shape: the value is unquoted, is an identifier or dotted path
followed by "(", and the call closes on the line or opens a multi-line
argument list. Quoted values, unclosed "(" inside an unquoted secret
(API_SECRET=Abc123xyz(9Qm) and calls carrying a high-entropy literal
argument still report. The literal check is shared with the #2912 env-read
exemption.

Co-authored-by: Yugz <yannduzelier@gmail.com>

* H #2962: per-machine config filenames are not internal hostnames

`CLAUDE.local.md` and `settings.local.json` reported internal.hostname
MEDIUM (the pattern's \b stops at the dot before the extension), which fails
closed in the decision log. A span immediately followed by a known config
extension (.md .json .jsonc .yaml .yml .toml .ini .conf .txt) and a word
boundary is a filename. Controls: `ssh build.local`, `printer.local.` at a
sentence end, `printer.local/md`, `printer.local.mdx`, a host with a port,
`api.corp`, `build-7.internal`. The `.env.local` vectors (#2740) pass on
main already via isDotenvFilename and are pinned here as regressions.

Co-authored-by: Florian <florian.cleyetmerle@gmail.com>

* H #2784: four-part versions need a version declaration, not a shape

`"version": "1.128.1.0"`, `<Version>`, `AssemblyVersion("1.0.0.0")` and
Keep a Changelog headings raised pii.ip_public MEDIUM on every release,
because a four-part version is byte-for-byte a dotted quad. Exempt only when
the same line declares it a version immediately before the value (a version
key or word, an XML tag, an attribute call, or a `## [x]` heading). The same
digits after host:/server =/"upstream", bare on a line, or after prose that
merely mentions a version still report. Unlike #2784, this does not exempt a
value because the same string is declared a version elsewhere in the text:
that let a real address sharing a diff with a matching version slip. The
pre-push hook's VERSION-file rule (#2856) is unchanged.

Co-authored-by: cdecook23 <decook23@gmail.com>

* H #2913: postgres:postgres is exempt only on a loopback host

The postgres image's default pair in compose files and CI DATABASE_URLs
blocked pushes as db.url_with_password HIGH. It is now exempt only for
postgres/postgresql URLs with exactly postgres:postgres on localhost or
127.0.0.1 (optional port). A bare single-label host (`db`, `postgres`), any
other host, a host that merely starts with localhost (`localhost.evil...`,
`localhost@prod-db`), any other user or password, and other schemes still
block. #2913 exempted the pair on any host; this keeps the plan's narrower
rule.

Co-authored-by: mb1810 <michael.berger1810@gmail.com>

* G1: ship without a version when no version source is configured

Resolve the version source to four outcomes (valid, absent, ambiguous,
broken) in lib/version-source.ts and read that one signal in
gstack-version-bump (new NO_VERSION state; write refuses to invent a
VERSION), gstack-next-version (no_version, no slot), /ship's bump,
CHANGELOG and title steps, /land-and-deploy's drift check and
/document-release. A configured version file that is missing, empty,
unreadable or malformed stops with its path; 0.0.0.0 is never
substituted. docs/skills.md documents .gstack/version-path.

Migrates two tests that pinned the old fabricated-0.0.0.0 behavior.

Co-authored-by: Koda <koda@edgeviewfinance.com.au>
Co-authored-by: Merit Blake <merit@newsprint.com>

* H #2949: eval credential screen checks every name segment

The hermetic eval env admits GITHUB_* and EVALS_* metadata but rejects
credential-shaped names, judged only by the last underscore segment. A
trailing qualifier carried a credential through: GITHUB_APP_PRIVATE_KEY_BASE64,
GITHUB_TOKEN_1, EVALS_API_KEY_FALLBACK reached eval children. The screen
now rejects a name when any segment is a credential word; segments, not
substrings, so GITHUB_PATH / GITHUB_TOKENIZER / GITHUB_KEYRING stay
metadata, and explicit runner admissions still win.

Co-authored-by: Nguyen Thanh Dat <ntdat812@gmail.com>

* H #2915: cover chunked scanning of large multi-file push diffs

Test-only coverage for behavior already on main: a clean two-file pushed
diff over the engine's 1 MiB cap passes without engine.input_too_large, and
a credential at the end of the second file (a later scan chunk) still
blocks the push.

Co-authored-by: pneumorea-ai <pneumorea@gmail.com>

* A3: keep a project's DATABASE_URL away from a PGLite brain

With a PGLite config, buildGbrainEnv returned the caller env unchanged, so
a project's .env DATABASE_URL (autoloaded by Bun) reached gbrain: a false
broken-db at best, gbrain talking to the app's own Postgres at worst.
Inherited DATABASE_URL and GBRAIN_DATABASE_URL are now blanked for PGLite
configs (GSTACK_RESPECT_ENV_DATABASE_URL=1 still keeps them), and every
gbrain child runs from gbrain's config dir instead of the user's project,
so it cannot reload the project's .env / .env.local.

The old test that pinned pass-through for an engine:pglite config is
migrated: pass-through now applies only to configs that name neither a
database_url nor PGLite.

Co-authored-by: maxpetrusenkoagent <max.petrusenko.agent@gmail.com>

* C9: guard destructive gstack-upgrade and spec fences against unset or wrong paths

Fresh-shell hosts (and Claude Code, which keeps cwd but not shell variables)
ran cd "$INSTALL_DIR" with an empty variable, so git checkout/stash/reset
targeted the user's project. Step 2 now prints an absolute path; every
destructive fence starts with cd -- "${VAR:?...}" || exit 1 and checks it is
gstack's own checkout before any git command. /spec's worktree and spawn
fences get the same guard.

* F4: keep every paid design variant across regenerate rounds

$D variants now reserves a collision-safe round-<N>/ directory per run
(atomic mkdir) and writes a manifest.json of what each round saved. The
paid image request and the local write retry separately: a write failure
retries the write (temp + rename) and, if the path stays unwritable,
keeps the bytes in the temp dir instead of buying the image again.
Responsive variants land in their round directory too.

Readers updated: design-shotgun reserves a round dir and a private temp
dir for its parallel agents and records approved_path/round in
approved.json; design-html resolves approved_path (legacy letters still
work) and finds round-dir variants; design-consultation checks the
printed paths; the gallery shows round-dir variants. Variants that were
already overwritten before this change cannot be recovered.

Migrates the consultation contract test that pinned the flat path.

Co-authored-by: Matt Van Horn <mvanhorn@gmail.com>

* A2: stage dot-leading slugs gbrain can collect; network errors are db-unreachable

A page slug segment starting with a dot (a .claude project) staged a file
gbrain's import walker prunes, so the batch was refused on every run.
Leading dots become "dot-" per segment, and slugs recorded in state under
the old name map through the same function so no page is duplicated.

A DNS or connection failure (ENOTFOUND, EAI_AGAIN, ECONNREFUSED, ...) no
longer classifies as broken-db, which routed users to move a working
config aside. The new db-unreachable status carries the reason
"database host unreachable (<code> <host>); your gbrain config is
unchanged. Fix: check network or VPN, then re-run /sync-gbrain.", skips
local sync stages with that reason, and counts as usable for
gstack-gbrain-detect --is-ok like timeout.

Co-authored-by: Infiniteyieldai <infiniteyield.ai@gmail.com>

* D2: one address classifier for navigation literals, DNS answers, redirects and page-driven navigations (#2811)

classifyAddress() in url-validation.ts blocks 169.254.0.0/16 (metadata and
container credential endpoints), 100.100.100.200, fe80::/10 and fc00::/7,
including IPv4-mapped, IPv4-compatible and NAT64 spellings and decimal,
octal and hex IPv4. validateNavigationUrl, the A/AAAA answer check and
session-persist's cookie-domain guard all use it. BrowserManager now checks
every navigation request (redirect hops, link clicks, scripted navigations):
a blocked target resets the tab to about:blank and the write command fails
with the reason. Connection-time DNS rebinding remains out of scope.

Co-authored-by: Gabriel Rondon <grondon@gmail.com>

* C4: external hosts point at carved sections relative to the installed skill

Publishes the pointer form setup matches: on every non-Claude host a carved
section is `sections/<file>` relative to the installed gstack-<skill> SKILL.md
directory (QA's existing form), never $GSTACK_ROOT/<skill>/sections/, which
does not exist in external runtime roots. No render changes yet: only QA is
carved on external hosts today.

* INV-1: gate outcome contract for outside reviews

classifyOutsideReview() returns separate execution, findings and verdict
fields from text, stderr and exit status; reason codes, anchors and fix
actions live in lib/gate-outcomes.ts. validateOutsideReview() stays as the
text-only wrapper and the two-argument CLI keeps exit 0/1/2 for importers
and installed skills that predate a re-render. The --verdict form (implied
by --stderr/--exit) prints VERDICT/FINDINGS/REASON and exits 0/3/4/1; the
generated outside-voice caller moves to it and branches on each status
(unverified prints OUTSIDE_STATUS: unverified, never completed).

Adds docs/troubleshooting.md with one anchored section per reason code, the
anchor test, and the gate-tail lint (query scripts may not swallow failures,
gate calls may not end in || true, other best-effort tails say why).

* G1: quote the base placeholder in document-release title sync

The title-sync block is checked with bash -n; an unquoted <base> parses
as a redirection. Migrates the test that pinned the old root VERSION
read to the shared classifier call.

* G3: give every logging-bin mktemp a ${TMPDIR:-/tmp} template

Bare mktemp, mktemp -t and literal /tmp templates in the learnings,
question and preference logs (plus jsonl-merge, distill, the two
dashboards, /ship's PR body and /document-release's run dir) now use
"${TMPDIR:-/tmp}/<name>.XXXXXX", the form the INV-3 lint accepts. When
the temp file cannot be created, the learnings, question and preference
logs now say the entry was not recorded and how to fix TMPDIR instead of
exiting with only mktemp's own error. Three tests that pinned the bare
PR_BODY_FILE=$(mktemp) and one that pinned the /tmp run dir migrate.

GNU and BSD mktemp already honor TMPDIR without a template, so the
macOS-sandbox drop in #2952 is unverified here; the template makes the
temp location explicit on every mktemp.

Co-authored-by: Davon Johnson <d.johnson@dayofshow.net>

* B1b: structured outside-review gate fails on P0 as well as P1

validateOutsideReview() derived its structured pass/fail from a [P1] match,
so a review reporting only [P0] findings passed. The wrapper now reads the
classifier's findings verdict (P0 or P1), and the /review and /ship
structured-gate prose requests [P0]-[P3] tags and fails on P0/P1; untagged
output (OUTSIDE_STATUS: unverified) is missing coverage. The ship clarity
pin moves from 'structured P1' to 'structured P0/P1' with the behavior.

* E1: freeze normalizes boundary and target the same way on Windows; hooks spawn through cmd.exe (#2876, #2354)

gstack_hook_normalize_path (careful/bin/hook-extract.sh) maps C:\..., c:/...,
UNC \\server\share (leading // kept) and /cygdrive/c to one form; check-freeze
runs both the saved boundary and file_path through it before the absolute
test, after symlink resolution, and compares case-insensitively on Windows
bash. freeze, guard and careful register hooks as
bash -c "exec bash \"$HOME/...\"" so cmd.exe, which never expands $HOME,
no longer turns the hook into a silent exit 127.

Co-authored-by: Kevin Grasso <kevin@biblingo.com>
Co-authored-by: Xuan-Ce Wang <261591073+xwang4-svg@users.noreply.github.com>

* G4: keep CLI-to-daemon loopback calls off HTTP_PROXY (#494)

The CLI appends 127.0.0.1, localhost and ::1 to the user's NO_PROXY (and
no_proxy), keeping existing entries, before its first fetch. Verified on
Bun 1.4.0: fetch honors NO_PROXY when it is set before the first request
and ignores later changes, so it is set at the top of main().

* F1: bind the plan audit to this branch's plan, never the newest file

Plan File Discovery now prefers an explicit binding (the plan-mode file
or /autoplan ACTIVE_PLAN from the conversation, then a "Plan: <path>"
line in the PR body), then lists candidates: repo-committed
docs/designs/ files this branch changed or that name it, and personal
plan files that name the branch. Candidates are offered, never picked
silently. The repo-name match and the newest-file-of-the-day fallback,
which audited PRs against unrelated plans, are gone. With nothing bound
or chosen it prints the exact line 'Plan completion audit: not run (...).
Fix: add "Plan: <path>" to the PR body, or run /autoplan.'

/ship's parent now binds the plan before dispatching the audit
subagent ({{PLAN_COMPLETION_GATE_SHIP:discovery}}), so the child never
searches. Migrates three tests that pinned the old markers and notice.

Co-authored-by: loulanyue <260355617@qq.com>

* G5: browse type --selector <sel> <text> (#2936)

--selector focuses the element (sel or @ref) and types into it. The bare
form still types its text literally into the focused element; text that
starts with -- goes after a -- separator. When the first word looks like a
CSS selector, the result adds a hint to use --selector without echoing the
typed text, and never refuses based on page contents. Help and command
usage updated.

Co-authored-by: Thomas Reuser <thomasreuser@gmail.com>

* F2: design-doc discovery reads docs/designs, never a root DESIGN.md

A root DESIGN.md is the design system /design-consultation writes, so
preferring it unconditionally reviewed plans against a token file while
printing "Design doc found" and never looked at docs/designs/ feature
docs. Discovery now considers only docs/designs/*.md as the repo-local
design doc (still freshness-compared with the private ~/.gstack copy).
The CEO finding fixture seeds its supplied design as a docs/designs doc
and its test follows.

Co-authored-by: Bit0ps <alex.dreamscaper@gmail.com>

* C4: rename the external carve test (typecheck:test union-order artifact)

tsc prints a union's members in type-creation order; a test file sorting
before ceo-mode-option.test.ts reordered one baseline diagnostic's text.

* C1: every env-var host fence resolves its own gstack root

Codex and the other env-var hosts run each block in a fresh shell, so
GSTACK_ROOT/BIN, B and D set by the preamble were empty in later blocks
(/bin/gstack-slug, B=/browse). scripts/resolvers/runtime-root.ts now owns
root resolution: a valid exported GSTACK_ROOT (bin/ and lib/), else the
per-install literal root (no git call), else repo-local, else the global root
(CODEX_HOME on Codex); no root prints the setup fix line and exits. One
post-render pass inserts it (<=400 bytes) into every fence that uses these
variables without assigning them; B/D come from the same helper as BROWSE
and DESIGN SETUP. Claude output is byte-identical.

Migrated pins of the old preamble lines (gen-skill-docs.test.ts) and a
fixture whose exported GSTACK_ROOT lacked lib/ (skill-positional-literals).

* E8: headless browse honors GSTACK_CHROMIUM_PATH; extensions load in new headless mode (#2771, #1968, #2281)

The headless launch passes GSTACK_CHROMIUM_PATH as executablePath, scopes
the XProtect self-heal out for that bundle, and names the path in a launch
failure with the fix. BROWSE_EXTENSIONS_DIR now launches a persistent
context under the project state dir with --headless=new, so the extension
runs and no window appears (the off-screen window was visible on macOS and
the extension never ran in an isolated newContext). The GPU source guard
test moves from the removed useHeadless flag to launch() vs launchHeaded().

Co-authored-by: oli548 <312288720+oli548@users.noreply.github.com>
Co-authored-by: Slava <slava.istomin@tuta.io>
Co-authored-by: ryanlaiwy <129729476+ryanlaiwy@users.noreply.github.com>
Co-authored-by: 李翊楠 <yinanli1917@gmail.com>

* C2: link design/dist and make-pdf/dist into every host runtime root and the agents sidecar

Codex design and make-pdf skills fall back to $GSTACK_DESIGN and
$GSTACK_MAKE_PDF under the runtime root, but setup linked only browse/dist,
so both preflights reported NOT_AVAILABLE on a fresh install. One helper
links dist/ only (make-pdf/ ships a Claude SKILL.md) into the Codex,
Factory, OpenCode, Cursor, Copilot and Kiro roots, the .agents sidecar and
the Cursor sidecar.

Co-authored-by: Mammad M. <mammad@digit.az>

* C3: install router and nested SKILL.md files as real copies; back up hand edits; --status checks

Codex skips a symlinked SKILL.md file, so the gstack router linked into
~/.codex/skills/gstack was invisible. Every host runtime root (Codex,
Factory, OpenCode, Cursor, Copilot, Kiro) and Kiro's per-skill installs
now get real copies, rewritten on every run (the auto-update path runs
setup --refresh-registered, so it refreshes them too). setup records each
copy's hash in <state root>/skill-copies.tsv; a copy that no longer matches
is saved to a uniquely named backup under <state root>/backups/skill-copies/
before _activate_runtime_root replaces the tree, and a failed backup keeps
the old tree. setup prints what it refreshed or removed.

./setup --status now prints, per registered install, whether the router is a
real file and whether every section pointer resolves, with the fix command.

Test migration: setup-codex-model pinned the Kiro router/upgrade links as
_link_or_copy; C3 deliberately changes them to copies.

* INV-3: install-level host conformance checks (no symlinked SKILL.md, dist present, section pointers resolve)

For codex, kiro, factory, opencode, cursor and copilot, the real-setup
conformance kit now fails when an installed SKILL.md is a symlink, when
design/dist or make-pdf/dist is missing from the runtime root, or when a
'Read `.../sections/<f>.md`' pointer in an installed SKILL.md does not
resolve (bare pointers in carved skills, relative-to-installed-skill
pointers, and $GSTACK_ROOT/~/absolute/../ pointers everywhere), and
./setup --status must report 'all resolve'. No new setup runs.

Expected red until the generator lane lands: design-html's install-offer
pointer and plan-eng-review's review-sections pointer name
$GSTACK_ROOT/<skill>/sections/... on every external host.

* B11: auto-update tracks pull, setup and migrations; announces only on success; retries with backoff

gstack-session-update wrote the 'just upgraded' marker after SETUP_FAILED or
SETUP_SKIPPED bun_missing, and re-ran setup only when HEAD moved, so a failed
install was announced as an upgrade and never retried. Stages are now
persisted in <state root>/session-update-pending; the marker is written only
when every stage succeeded; a pending setup or migrations stage is retried
even with HEAD unchanged after the update-check interval, then 6h, then 24h;
and each session start prints one line naming the stage, the reason and the
repair command while it is pending. Best-effort tails carry a same-line
reason.

* D1: gstack-config key browse_extension_id for forks and self-built extensions

The browse daemon trusts one Chrome extension ID on /extension-token and the
terminal-agent /ws. The override now lives only in gstack-config (never an
env var a project .env could set): empty by default (gstack's published
extension), a 32-letter a-p Chrome ID when set, "" clears it, and anything
else is rejected with the stored value kept. The browse lane reads it.

gstack-config-defaults: browse/src counts as a reader directory; the key is
listed prose-only until the browse lane's reader lands (the stale-entry check
then asks for the entry's removal).

* G2: key the sticky slug cache on the git common dir

A linked worktree used to resolve its slug fresh from the remote while
the main checkout kept its sticky pre-remote identity, so learnings,
checkpoints and timelines split into two buckets. gstack-slug and its
TS twin in lib/bin-context.ts now key the cache on the git common dir
(read from .git files, no git spawn, so cache hits stay git-free) and
read entries in one deterministic order: the repository entry, then the
main checkout's pre-upgrade entry, then this directory's own. Both the
repository and per-path entries are written.

When a worktree's own old entry named a different bucket that still
holds data, that slug is recorded in projects/<slug>/.former-slugs and
reported by --get FORMER_SLUGS. New --adopt-legacy --from <slug> merges
it: JSONL logs append missing lines with de-duplication, missing files
copy, differing files are listed as conflicts and never overwritten,
the source bucket is kept, and it prints migrated/pending/conflicting
counts; reruns are idempotent. --adopt-legacy --dismiss <slug> drops
the reminder.

Co-authored-by: loulanyue <260355617@qq.com>

* C5: OpenCode /gstack-* commands load the skill by its frontmatter name

OpenCode's skill tool knows gstack-review as `review` (its frontmatter
name), and OpenCode's builtin /review shadows that name as a command. The
managed /gstack-review command told the agent to load `gstack-review`,
a name the skill tool does not list. Every managed command now names the
frontmatter name. OpenCode's AskUserQuestion/ExitPlanMode mapping (#2759)
already shipped in v1.91.16.0.

Test migration: the #2629 commands test pinned the directory name.

Co-authored-by: Lockyer <135391289+Lockyer228@users.noreply.github.com>

* E4: Windows node-server bundle keeps sharp and socks external; CLI resolves its server script lazily (#2260, #2439)

build-node-server.sh passes --external sharp and --external socks (Bun on
Windows refuses to inline them; on Linux they were silently inlined). The
CLI no longer resolves server.ts or server-node.mjs at module load:
resolveServerLaunch() runs when a server starts, so a Windows minimal
runtime with only server-node.mjs works and a missing script is reported
only when one is needed.

Co-authored-by: Spooks444 <193448029+Spooks444@users.noreply.github.com>
Co-authored-by: punksterlabs <77217235+punksterlabs@users.noreply.github.com>

* B1: Codex reviews whose sandbox could not start are unavailable, not a pass

In containers without unprivileged user namespaces every Codex command
fails, yet the review exits 0 and concludes 'no findings' (captured in
test/fixtures/codex-sandbox/). The validator now takes execution evidence:
'codex exec --json' command events and the 'codex review' stderr transcript
(a command that succeeded proves execution); sandbox failure lines on
stderr or in failed command output return unavailable(sandbox_unavailable);
exact 'could not run commands / read the diff' phrases are the last
fallback. Review text that merely discusses bwrap or namespaces still passes.

A free 'codex sandbox ... true' preflight (Linux, 10 s) runs before the paid
model probe and every automatic outside review; CODEX_MODE gains
sandbox_unavailable, and an inconclusive model probe reports unverified
instead of ready (exit code kept for stale callers). Every Codex site
(outside-voice resolver, /codex review, challenge, consult) takes its sandbox
from _GSTACK_CODEX_SANDBOX and pipes its result through the validator; a
static test parses rendered command positions for both. GSTACK_CODEX_NO_SANDBOX=1
(exactly 1, shell env only) switches to danger-full-access with a warning on
every use. Sandbox pins in existing tests move from the literal read-only to
the selected-sandbox variable; captured autoplan probes are judged against
the probe block they executed.

* C6: gstack-relink discovers skills structurally, so /browse survives a skill_prefix toggle

relink skipped a hardcoded list of support-directory names that included
browse, a real skill, so toggling skill_prefix removed /browse. A top-level
directory is now a skill exactly when it carries a SKILL.md.

Co-authored-by: Jonathan Zhang <topcoder1@Mac-Studio.local>

* C4: carve ship and plan-ceo-review on every host; enforce the 160 KB byte gate

The generated ship skill was 202-241 KB on all 10 non-Claude hosts (and
Factory plan-ceo-review 160,039 bytes), over the 160,000-byte ceiling,
because section carving ran only for Claude. Both skills now carve on every
host, pointing at sections relative to the installed skill directory (literal
$GSTACK_ROOT/<skill>/sections refs are rewritten the same way). The ceiling
is measured in UTF-8 bytes and fails generation in repo mode; under
--install-root it warns so setup never leaves a user without skills.

qa-lazy-sections.test.ts pinned ship as inline-on-external-hosts; migrated to
the carved policy and kept the inline check on review (Claude-only carve).

* B5: learnings and timeline reads fail loudly when bun is missing

gstack-learnings-search and gstack-timeline-read ended in
'2>/dev/null || exit 0', so a missing bun or a crashed embedded script
printed nothing and exited 0, identical to 'nothing recorded'. Both now
exit 127 with '<script>: bun not found on PATH, so ... could not be
read. Fix: install Bun (https://bun.sh), then re-run ./setup.' and let
an embedded-script failure exit non-zero with its stderr. A successful
run with no matches still exits 0 with empty output. The generated
callers that print 'LEARNINGS: unavailable (...)' belong to the
generator lane.

Co-authored-by: loulanyue <260355617@qq.com>

* B2: a retired-model 404 reports MODEL_UNUSABLE, not CODEX_MODE: ready

The model probe matched only 400 / 'is not supported', so a retired model's
404 ('does not exist or you do not have access to it') and a custom
provider's bare 404 fell through to the inconclusive branch and reported
ready. Both now classify as MODEL_UNUSABLE with a hint naming the two causes
(retired model, or a wrong base_url) and log codex_model_retired; a
'requires a newer version of Codex' 400 points at upgrading the CLI and logs
codex_cli_outdated. Ported from #2843 onto the current probe.

Co-authored-by: Marek Cermak <marek.cermak@strv.com>

* B6: rank learnings by matched query tokens and disclose truncation

A more specific query used to drop the exact match: the token-OR filter
recalled every entry sharing one token, the sort used confidence alone,
and the default --limit cut silently. Entries now rank by how many
distinct query tokens they match, then confidence, then recency, and a
query that matched more than fit says '-- N more matched, raise --limit
to see them'. The hit count lives in a local map so a field stored on
disk can never become a sort key, and the type grouping uses a
null-prototype map so a row typed 'constructor' or '__proto__' cannot
crash the run. Ranking code ported from #2796; regression vectors
adapted from #2799 (its stemmer is not needed).

Co-authored-by: loulanyue <260355617@qq.com>
Co-authored-by: y$un_ <forrest.sun527@gmail.com>

* C7: required team mode also blocks Copilot CLI's lowercase skill tool

Copilot CLI applies Claude-format matchers by tool name; its skill tool is
`skill`, which no Claude tool name maps to, so the 'Skill' matcher never
fired and Copilot ran protected skills without gstack. The hook entry now
matches 'Skill|skill', an entry an older team-init wrote is upgraded in
place, and the deny is emitted in both decision formats (Copilot reads the
top-level permissionDecision, Claude Code reads hookSpecificOutput) with
exit 0 so both parse it.

Test migration: the settings test pinned matcher 'Skill'.

Co-authored-by: neallee <neallee@gmail.com>

* B3: Codex auth probe accepts custom providers' env_key credentials

The auth probe only knew CODEX_API_KEY, OPENAI_API_KEY and auth.json, so a
working self-hosted or OpenAI-compatible provider configured with
[model_providers.<id>] env_key = "X" reported AUTH_FAILED and /codex
stopped. The probe now reads env_key from model_providers tables only
(comments ignored, the name must be a shell identifier before it is
dereferenced) and accepts a set variable; when none is set it names the
missing key on stderr. Ported from #2192 with the table scoping added.

Co-authored-by: hardy <932821449@qq.com>

* E8: keep the extensions profile under the state dir at a path lock cleanup accepts

cleanSingletonLocks only cleans directories named chromium-profile, so the
BROWSE_EXTENSIONS_DIR profile moves to <state>/extensions/chromium-profile.

* B10: plan-tune never reports CALIBRATED with zero signal events

Stats printed CALIBRATED: true from logged-answer counts alone, while
every answer could miss SIGNAL_MAP and leave each dimension at its 0.5
seed (#2623). --derive now records inferred.signal_events, the answers
that actually moved a dimension; calibration requires at least one, and
the summary prints 'not calibrated: no recorded signals' verbatim when
there are none (or says the count is unknown for a profile derived
before this change). The psychographic redesign stays out of scope.

* A1: verify gbrain landing before stamping transcripts, plus --reconcile

gbrain import exits 0 while skipping pages (returned per-file failures,
malformed filenames, managed-import Pending receipts), and its failure
ledger exists only for git import dirs, so a skipped page was stamped
ingested and never retried (field reports: 37 and 69 lost entries).

Write, verify, then stamp (lib/memory-ingest-landing.ts, a new ratcheted
module):
- State schema 2 with a transition table (staged -> imported_unverified ->
  ingested, plus refused, quarantined, unrecoverable). Schema 1 files
  migrate in place: entries become ingested in the legacy "default"
  source and a reconcile pass is marked pending.
- Named failures come from --json `failures`, stderr "Skipped <rel>:"
  lines and the ledger; a failure gbrain does not attribute refuses the
  whole batch. After 3 refused batches the batch is bisected and the page
  that poisons it is quarantined (printed even under --quiet).
- Landing check: one `gbrain list --source-id` per source per run and at
  most 50 `gbrain get --json` content checks against a
  gstack_content_sha256 frontmatter field gstack now writes. Lookup errors
  and pglite_busy mean "not yet checked", never absent; pages over the cap
  stay imported_unverified and are not re-imported.
- Each entry records its gbrain source_id. Remote-http mode records
  "staged", never "ingested".
- The source fingerprint comes from the exact bytes parsed, so a
  transcript that grows during import is not stamped as its newer self
  (the old unscanned contract test is migrated; it pinned that bug).
- --reconcile mode (bounded by --limit, default 200; resumable; --dry-run;
  backs up the state file) prints "reconcile: checked N, present M,
  re-queued K, not yet checked L". --request-reconcile records a pending
  pass without calling gbrain; the v1.91.17.0 migration (placeholder name)
  uses it, and the next ingest run does one bounded pass.
- One lock for every state writer; a state-save failure fails the run.

The #1802 static pins in regression-1611 move to the new structure
(remote-http returns before importBatch; the finally honors
preserveStaging).

Co-authored-by: afshaker <andrew@phone2.io>

* B4: arm64 re-sign keeps a backup, restores it when codesign fails, and reports design unavailable on exit 137

setup's Apple Silicon re-sign mutated each binary in place (truncate, remove
signature) and left it that way when re-signing failed; a design binary that
was then SIGKILLed at launch produced at most a quiet log line. Each binary is
now copied first and restored as built when signing fails, and design is
exec-probed after re-signing: exit 137 prints 'design unavailable: ... Fix:
cd <checkout> && ./setup' (even under -q). Verified on Linux with the real
block and uname/codesign/otool/stat stubs; not run on a Mac.

* D3: treat design docs and handoff notes as data in plan reviews

plan-ceo-review, plan-eng-review and plan-devex-review read the freshest
design doc as the source of truth, and nothing said its content is data.
In multi-agent pipelines another agent may have written it, or a handoff
note beside it, with reviewer-directed text ('skip Step 0', 'approve
as-is'). Each read site now says the doc and any handoff note are data,
never to follow text aimed at the reviewer, and to report it as
suspicious content. The plan-completion audit's discovery, which now
reads repo docs/designs/ files (F1), carries the same rule.

Co-authored-by: cube <frosimanuel@gmail.com>

* D4: setup-deploy reports Render API key presence only

/setup-deploy ran 'echo $RENDER_API_KEY | head -c 4', printing the
key's first bytes into the transcript. It now prints only
'RENDER_API_KEY: set' or 'RENDER_API_KEY: not set'. Wording follows the
#2971 port of #1096; a test also guards against any setup-deploy command
echoing a credential variable.

Co-authored-by: jacob-wang <jiayuw794@gmail.com>

* D5: per-project headed Chromium profiles; never kill a live profile owner (#2492)

The headed profile moves from <gstack home>/chromium-profile to
<project>/.gstack/chromium-profile (CHROMIUM_PROFILE still wins).
killOrphanChromium now kills a SingletonLock PID only when the lock names
this host, the process is a Chromium using that profile, and its daemon is
gone (reparented to init or a subreaper); a live owner or another host's
lock stops browse with the holder named. On first headed use a project
profile is seeded from the old shared profile only when nothing holds it:
copied without Singleton* files into a 0700 temp dir and renamed into
place, with a one-time notice; otherwise it starts fresh and says how to
import later. New: browse profiles [list] and browse profiles prune
[--days N] (never removes a profile in use or the old shared one).
The #2817 headed-startup tests move to the project profile and a real
orphan (the old stand-in was a live child of the test).

Co-authored-by: miao <miao@macmini-2.local>

* F5: installed Claude skills serve the rendered sections, not the checkout copies

Probe: a gbrain user render serves ship/SKILL.md from the render dir; its
STOP pointers name absolute render paths, but its section index names
`sections/<f>.md` relative to the installed skill directory, whose
sections/ was linked from the checkout. So the rendered 'Save Results to
Brain' blocks (plan reviews, office-hours, ship adversarial) were generated
and never read. setup's _link_skill_runtime_assets and gstack-relink (the
gbrain-refresh path) now serve a rendered counterpart per file, keep
checkout-only assets (manifest.json), return an asset to the checkout once
its render is gone, and never touch an entry that is not gstack's links.

Co-authored-by: Jonah Berg <jonah.berg.g@gmail.com>

* F1: ratchet /ship's parity union-size cap for this lane's content

G1's NO_VERSION arms, F1's parent-side plan binding and D3's data line
add 2,126 bytes to /ship's skeleton-plus-sections union, taking it from
1.4022x to 1.4135x of the v1.64.1.0 baseline (cap was 1.405). The cap
moves to 1.414 with the measurement recorded, as earlier growth did; no
other invariant changes.

* E5: feed every Codex prompt on stdin instead of argv

Prompts went to Codex as one argv string ('codex exec "$(cat file)"'), which
fails over 32 KB on Windows (and over 128 KB on Linux, E2BIG) and mangles
quotes. Every codex exec site (outside-voice resolver, /codex review custom
instructions, challenge, consult new and resume) now runs 'codex exec -'
with the prepared prompt file on stdin; challenge and consult write the
prompt with a quoted heredoc so it is never shell-parsed. The bash-native
timeout watchdog (stock macOS) started the command in the background, which
gives it /dev/null as stdin; it now passes the caller's stdin through.

The 'byte for byte' dispatch test drops its old argv trailing-LF exception,
the consultation and autoplan fixtures follow the stdin form, and the static
site test requires stdin at every rendered codex exec.

* G6: prettyscreenshot --hide keeps a trailing image path as the output path (#1419)

--hide collected every following non-flag argument as a selector, so the
output path was hidden instead of written to. A trailing argument that looks
like a path or ends in .png/.jpg/.jpeg/.webp is now the output path.

Co-authored-by: Jayesh Betala <jayesh.betala7@gmail.com>

* INV-3: render-level host conformance and generated-bash lint on every host

One render per host checks every fence of every SKILL.md and section file:
bash -n with angle-bracket placeholders normalized; the env-var host prelude
and its B/D consumers run under env -i and set -u with stub binaries (no
empty value, no /bin/, /browse, /design or /gstack- path); and a quote-aware
lint (test/helpers/generated-bash-lint.ts) fails on a ~/ word inside double
quotes, mktemp without a TMPDIR-respecting template, and cd/rm -r/mv/git -C
on a variable the fence never assigned unless written ${VAR:?...} (cd must
also handle failure). Negative controls plant each failure.

Templated the bare mktemp calls in generator-owned resolvers and the upgrade
fence; migrated the two tests that pinned the bare form.

* G6: analytics averages quoted duration_s values (#1728)

gstack-skill-end writes duration_s as a quoted string, and the per-skill
average stripped everything from the leading quote, so every average
read 0s. The awk now drops a leading quote before extracting digits.

Co-authored-by: Ryan Alberts <ryan.a.alberts@gmail.com>

* G6: gstack-ios-qa-daemon --help prints usage instead of starting the daemon (#1932)

Co-authored-by: maxpetrusenkoagent <max.petrusenko.agent@gmail.com>

* G1: tighten /ship's NO_VERSION wording to fit the union-size cap

Same behavior in fewer bytes: the NO_VERSION arm, the broken-source
exit, the unprefixed-title rule, the Step 20 null and the CHANGELOG
skip. The cap ratchet commit measured this wording.

* G6: rejected taste preferences gain confidence (#1777)

bumpPref computed every entry's confidence from approved_count, so a
rejected entry, which never gains approvals, stayed at 0: show ranked
rejections by insertion order and the taste-drift warning could not
fire from real use. Confidence now uses the entry's own bucket count.
Also salvaged by Garry's #2971.

Co-authored-by: Jayesh Betala <jayesh.betala7@gmail.com>

* E2: Windows /cso build disables only C5105, and a failed MSVC compile is not reported as a missing toolchain

The Windows SDK's winbase.h raises C5105, which /W4 /WX promotes to error
C2220, so every MSVC build of the native /cso helper failed, and setup
mapped every probe failure to 'install Visual Studio 2022 Build Tools'.
Both compile lines add /wd5105 (only that diagnostic), and setup keeps the
probe's output: a probe that found MSVC but failed to compile reports
windows-msvc-compile with the compiler's first error. Not run on Windows:
the mapping test stubs powershell.exe; the ps1 assertion runs everywhere.

Co-authored-by: AlinValentin7 <AlinValentin7@users.noreply.github.com>

* E6: gbrain-refresh hands the detection file to Python on stdin

Under Git Bash, a native Windows Python first on PATH cannot open an MSYS
/c/... path, so gbrain-refresh always summarized the detection as
'local-status: unknown' and brain-aware blocks were suppressed. bash now
opens the file and Python reads stdin; the grep fallback without Python is
unchanged. Verified on Linux with a stub Python that refuses path opens; not
run on Windows.

Co-authored-by: maxpetrusenkoagent <max.petrusenko.agent@gmail.com>

* G6: context-save computes session duration on Linux (#2704)

The duration step parsed 'ps -o lstart=' with BSD-only 'date -jf', so on
Linux session_duration_s was always unknown. It now falls back to GNU
'date -d', and never parses an empty start (GNU reads that as midnight).
Ported onto the current block instead of #2704's ~/.gstack/sessions
mtime, which bypassed the state root.

Co-authored-by: Evgenii Lopatin <e75533@gmail.com>

* Q2: one-time notice naming the Codex provider and account for outside reviews

Outside reviews are on by default and use whatever Codex login exists
(#965). The first automatic Codex review on a machine now prints one
non-blocking notice: the provider (config.toml model_provider, else openai),
where the credential comes from (CODEX_API_KEY, OPENAI_API_KEY, the ChatGPT
login or the key saved by codex login; never the value), that reviews stay
on, and how to turn them off (gstack-config set codex_reviews disabled). A
marker in the gstack state root keeps it to once per machine. Tests that run
the generated command now use private state roots. Also shortens the
no-sandbox provenance line.

* Q1: validate browser output paths the way the kernel resolves them (#2971 salvage)

validateOutputPath walks the destination one component at a time, resolving
each existing component before the next, so link/../x, a dangling symlink
and a dangling symlinked parent can no longer route a write outside the
safe directories, while a new multi-level directory inside them is allowed.
scrape validates its manifest and every downloaded file, not only --dir.
Ported from PR #2971 onto current code.

* G6: retro test census counts non-JS suites, skips generated output

The census recognized only JS/TS-style names, so pytest and minitest
(test_*.py|rb), XCTest (Tests/ dirs, FooTests.swift), Terraform
(*.tftest.hcl) and Bats (*.bats) suites counted as zero, and a committed
build directory counted as authored code (and its Test/ subdirs as test
LOC). is_test now knows those conventions and never treats prose as a
test, generated output is skipped in the numstat pass, TEST_FILES_CHANGED
uses is_test, and TEST_FILES_TOTAL uses the same filename conventions
minus generated paths. Merges #2812, #2809 and #2037's patterns (#2037's
retro template edits target a block the metrics bin replaced).

Co-authored-by: Jino <dgfrty00@gmail.com>
Co-authored-by: snig-17 <santosh.m.tiwari@gmail.com>
Co-authored-by: Sholto McNeilage <sholto@nodenarrative.com.au>

* Q3: setup stops auto-installing the AskUserQuestion preference hook in Conductor and removes one it added

The PreToolUse question-preference hook breaks Conductor's native
AskUserQuestion round-trip even when it only defers (#2207), and setup
auto-installed it on every Conductor workspace setup. Now a Conductor setup
without an explicit opt-in never installs it and removes an existing one
(the question-log and AUQ-error hooks stay), printing how to keep it
(gstack-config set plan_tune_hooks yes). An explicit opt-in still installs
it. gstack-settings-hook remove-source gains --event to scope the removal.

Test migration: setup-plan-tune-hooks-noninteractive pinned the retired
Conductor auto-opt-in.

Co-authored-by: Phil Hie <philhie@outlook.com>

* E5: watchdog stdin test feeds the wrapper through a redirect

Callers run '_gstack_codex_timeout_wrapper ... codex exec - < file'. Bash keeps
stdin for a backgrounded command inside a pipeline but not behind a
redirect, so the pipe form passed on the old watchdog; the redirect form
reproduces the lost prompt.

* F4: type the variant-round fetch stub like the existing stubs

The test-typecheck ratchet flagged the zero-argument stub cast to
typeof fetch; it now takes the fetch arguments like
variants-retry-after's stub. Test behavior unchanged.

* A4: import transcripts into per-repository, non-federated gbrain sources

`gbrain import` ran without --source-id, so transcripts from every project
landed in the shared (often federated) default source.

- Each transcript partition imports with --source-id into its originating
  repository's own source (gstack-transcripts-<repo>, built with
  constrainSourceId, now exported from lib/gbrain-sources.ts). The source
  is registered machine-local and --no-federated before its first import,
  and the registration is cached in state. Partitions import one after
  another (PGLite is a single writer); a failing source no longer blocks
  the others, except a timeout, whose checkpoint must survive.
- If gbrain cannot register the source, that partition stays local and
  unstamped, and the run says why (even under --quiet).
- --include-unattributed sends repo-less transcripts only to the
  machine-local gstack-transcripts-unattributed source, keeps them on the
  machine when the brain is remote (Postgres, Supabase or remote-HTTP),
  and never writes them to the publishable ~/.gstack/transcripts staging.
- A page's recorded source is sticky: pages stamped before this release
  ("default") keep importing there, so no source gains a duplicate.
- The staging dir name carries -src-<id> so a resumed import keeps its
  source.

Test fakes that recorded only the last import now record every import of
one run, and answer `gbrain sources`; remote-http scan tests use an
attributed transcript, since unattributed ones no longer stage there.

Co-authored-by: Sinabina <sinabina@Sinabinas-MacBook-Pro-4.local>

* F3: load the taste profile, and report a failed slug lookup

The taste-profile probe double-quoted ~/.claude/.../gstack-slug, so the tilde
never expanded and /design-consultation and /design-shotgun always printed
NO_TASTE_PROFILE. Use quoteSafePath(); stop hiding gstack-slug's stderr and
print TASTE_PROFILE_UNAVAILABLE with the fix when the slug cannot be resolved.

* B4: DESIGN_READY only when the design binary actually starts

DESIGN SETUP (and office-hours' visual exploration) printed DESIGN_READY for
any executable binary, so one SIGKILLed at launch by an invalid macOS code
signature still passed. Launch it under the portable 10-second deadline
(gtimeout, timeout, or perl alarm); otherwise print DESIGN_NOT_AVAILABLE with
the exit code, 'timed out after 10s', or on 137 the code-signature hint and
'Fix: cd <checkout> && ./setup'. A success is cached by inode and mtime under
the state root so Gatekeeper's first-launch scan is paid once.

The probe launches the binary with no arguments (usage, exit 0): the design
CLI has no --version command today.

* C2: name the runtime root every way a generated preflight may read it in the dist test

The generator lane's C1 resolves D from $GSTACK_ROOT instead of
$GSTACK_DESIGN, so the test now exports GSTACK_ROOT as well; it still fails
on main (no dist in the roots) and passes with and without the C1 change.

* A5: brain-sync stage fails loud when the artifacts source indexed zero pages

The stage reported "curated artifacts pushed" whenever gstack-brain-sync
exited 0, but a git push is not gbrain indexing. After a successful push
the stage now reads the maintained artifacts source's page count
(GSTACK_BRAIN_SOURCE_ID, else the source whose path is the artifacts
worktree or state root): zero pages is ERR with the fix command; a
missing source or an unavailable count says so instead of claiming
indexing.

Co-authored-by: Jimmy Zeisweiss <4261258+jzeisweiss@users.noreply.github.com>

* B1: state the effective read-only sandbox in /codex review prose

The codex parity invariant requires the skill to state sandbox_mode="read-only";
the command now takes it from _GSTACK_CODEX_SANDBOX, so the prose names the
effective default explicitly.

* A6: report deleted-worktree gbrain sources; prune only with proof, on request

A deleted Conductor worktree leaves its gstack-code-<hash> source behind
and gbrain's autopilot fails on it forever. Local absence is not proof a
source is dead (machines sharing a federated brain register their own
paths, and its pages may be the only copy of uncommitted work), so gstack
never removes one automatically.

- Each sync counts consecutive misses for gstack code sources whose path
  is missing, prints "path unavailable" once per source with the review
  command, and records which repository each synced source belongs to.
- New gstack-gbrain-sync --prune-gone-worktrees (with --dry-run, whose
  plan it always prints first) removes a source only when its path was
  missing on two consecutive syncs, its parent is readable, recomputing
  deriveCodeSourceId() for that path on this host yields its id, and the
  repository's git common dir still exists and no longer lists the
  worktree. It re-checks the path right before removing (through the
  #1734-guarded safeSourcesRemove) and logs each removal.

* D0: pass the Bun child flags after 'run' so wrappers that rewrite 'bun run' argv keep working

bun run --no-env-file --config=/dev/null <script> has the same effect
(verified on Bun 1.4.0) and keeps argv[1] === 'run', which the
publication-lock fixture's preload injection relies on. The sidebar-tabs
source guard now expects the flags in the terminal-agent spawn.

* E8: count the BROWSE_EXTENSIONS_DIR persistent launch in the signal-flags guard

The new launch site carries handleSIGINT/SIGTERM/SIGHUP false like the
other three, so the guard's expected count moves from 3 to 4.

* D2: give the memory-leak reproducer's fake request isNavigationRequest()

wirePageEvents now runs the navigation guard on every request event; the
fake request adapter supplies the method real Playwright requests have.

* A7: run only the resolve_symbol_edges dream phase, detected first

/sync-gbrain --dream and the --full auto-build ran gbrain's full dream
cycle (~35 minutes, LLM phases) when the call graph needs only the
resolve_symbol_edges phase. The stage now runs
gbrain dream [--source <id>] --phase resolve_symbol_edges when the
installed gbrain accepts that phase (detected by behavior: gbrain
validates --phase before printing --help). Otherwise it skips the forced
dream and says the full cycle costs about 35 minutes and how to run it,
instead of starting it.

Co-authored-by: liutiming <timingliu@outlook.com>

* D0: keep the dotenv isolation test runnable on the Windows lane

The compiled probe gets its .exe name on Windows, and the terminal-agent
case (owner identity comes from ps) is skipped there.

* B9: read cycle_freshness from a doctor run that includes it

/sync-gbrain Step 3.5 and the --full auto-dream decision read CYCLE from
gbrain doctor --json --fast, which skips the DB checks that carry
cycle_freshness, so the answer was always "unknown". Both now read
gbrain doctor --json --scope=brain (DB checks, no skill-file walk), parse
its JSON even when doctor exits 1 for a failing check, and match the
issue that names this source: "never completed" is never, "last cycled
Nh ago" is completed. When the installed gbrain does not report the
check, they say "unknown: installed gbrain does not expose
cycle_freshness" (lib readCycleStatus carries the reason to the --full
SKIP row).

The source-probe fixture that pinned the --fast call and a made-up
message format now answers --scope=brain with gbrain's real message.

* B4: compact the launch probe (cache keyed on inode, valid while newer than the binary)

Keeps design-consultation inside its parity size budget.

* C4: migrate the ship docs-dispatch test to the carved external ship

On Codex and Factory the documentation dispatch now lives in
sections/documentation.md behind a pointer relative to the installed skill,
like Claude; the test pinned the old inlined layout.

* B5: learnings callers report a failed search instead of reading as empty

Every generated gstack-learnings-search caller ended in 2>/dev/null || true,
so a missing bun or a failed search looked like 'nothing recorded'. Callers
now keep stdout, capture stderr and the exit status, and print
'LEARNINGS: unavailable (<first stderr line>)' on failure (resolver callers
in learnings.ts and review-army.ts, plus investigate, qa and ship's
adversarial section).

* F1: ship and review count unverified/unavailable outside reviews as missing coverage

INV-1 consumers in this lane's templates: /ship's readiness note, its
PR body Pre-Landing Review section and /review's completion rule now say
an outside review reporting unverified or unavailable is missing
coverage, never a pass. The PR body's Plan Completion section prints
F1's not-run line instead of the old 'No plan file detected.' The /ship
union-size cap moves to 1.415 for these lines (measured 1.4148).

* A8: rename the artifacts repo with OWNER/REPO, rewrite the remote only after it

The v1.27.0.0 migration passed a bare repo name to gh repo rename / gh
repo edit, which always fails (gh wants [HOST/]OWNER/REPO), then step 2
rewrote ~/.gstack-artifacts-remote.txt to the never-renamed repository.

- Qualify both names with the owner from the recorded remote URL (else
  the signed-in gh user) and surface gh's error.
- Step 2 moves the remote file but rewrites the URL only once the rename
  is confirmed; a later successful retry rewrites it then.
- A pending journal now counts as state to migrate, so the #1383 retry
  actually re-runs step 1 (it used to see no legacy file and declare the
  migration done).
- The v1.91.17.0 migration (placeholder name) repairs installs already
  hit: when the remote names gstack-artifacts-<user> that does not exist
  but gstack-brain-<user> does, it restores the old URL in the remote
  file and ~/.gstack's origin and says so. It only calls gh for such a
  remote and never fails the upgrade.

Co-authored-by: Brandon Pugsley <aibpaem@gmail.com>

* B8: read gbrain JSON with bun instead of jq in install and wireup

gstack-gbrain-install read package.json with jq but never checked for it,
so on a machine without jq a successful install failed with "cannot read
version". gstack-gbrain-source-wireup hard-failed without jq ("brew
install jq" is not actionable on git-bash), so the wireup was skipped on
every run. Both now read the JSON with bun, which they already require.

Co-authored-by: benjamin beres <benjamin.beres@bienpreter.com>

* B4: shorter probe messages (design-consultation parity budget)

* B5: shorter capture variable names (parity budget)

* E7: find the Aside CLI in ~/.local/bin when it is not on PATH (#2902)

The installer puts aside in ~/.local/bin, which is not on the default macOS
login PATH, so the probe said NEEDS_ASIDE ('download Aside') for a healthy
install. The probe now falls back to ~/.local/bin/aside, drives the resolved
binary, and prints READY: <path> when it is off PATH so later blocks run that
path. Ported from PR #2965 onto the current _gs_d probe.

Co-authored-by: Som Samantray <som.samantray@gmail.com>

* A2: key the dot-slug catalog entry on the message users actually saw

* E1: cmd.exe-safe investigate freeze hook

On Windows Claude Code runs hook commands through cmd.exe, which cannot parse
the single-quoted bash -c argument, so /investigate's scope-lock hook never
ran. Use one double-quoted bash -c script that names the hook path directly
(no S= variable: POSIX sh would expand $S to empty and skip the hook).

* F4: design resolver reads per-round variant paths

$D variants now writes $_DESIGN_DIR/round-<N>/variant-*.png and prints JSON
with roundDir, manifest and paths. The mockup flow and comparison-board loops
build the board from those printed paths instead of hardcoded
variant-{A,B,C}.png, and approved.json records approved_path and round so a
round-1 choice made after round 2 still resolves.

* E4: generators tolerate Bun's spurious EEXIST on Windows (#2329)

Bun on Windows throws EEXIST from a recursive mkdir of an existing directory,
so gen:skill-docs and the llms.txt writer crashed once a second file landed
in a directory. Both now use lib/fs-utils' mkdirpSync (ported from PR #2329
onto the existing helper instead of a new scripts/fs-utils.ts).

Co-authored-by: Vaughan <vaughan@cairnsitguy.com.au>

* C7: keep the required-mode hook's exit-2 deny

Copilot CLI treats a preToolUse exit 2 as deny (its hooks reference), and
#2413 established exit 2 plus hookSpecificOutput as the shape Claude Code
enforces, so the deny output stays as on main; only the matcher and the
in-place upgrade of older 'Skill' entries change.

* C3: guard Kiro's router copies on a present source; give the QA pointer adapter the copy and dist helpers

A copy fails where a symlink dangled, so the Kiro router and upgrade copies
are written only when their render exists (as every other runtime root
already does). test/qa-lazy-sections' extracted Kiro installer now supplies
_link_runtime_dists (C2) and the SKILL.md copy helpers (C3).

* Q3: office-hours asks open-ended questions in a Q<N> prose form (#2719)

In Conductor, and whenever AskUserQuestion fails, prose is the only channel,
and the prose fallback defined only the D<N> decision brief. Phase 2A/2B
diagnostic questions have no option set, so the model dropped the phase.
Office-hours' preamble now defines the Q<N> open-question form (question,
why I'm asking, what a strong answer sounds like) and routes free-text
replies to it; the diagnostic sections name it. Scoped to office-hours so
every other skill's preamble is unchanged. Ported from PR #2729.

Co-authored-by: Bharadwaj Mittapelli <bharadwajmittapelli@gmail.com>

* A2: render db-unreachable like timeout

gbrain's new db-unreachable status is a transient network failure; a setup
run while offline must not strip brain-aware blocks from every skill.

* A2: treat db-unreachable like timeout in gbrain-refresh

The memory lane's new db-unreachable status (network or DNS failure, config
intact) is transient, so gbrain-refresh keeps rendering brain-aware blocks
for it exactly as it does for timeout instead of suppressing them.

* C8: a render given disabled skills drops them from the router (#3018)

The root router named every skill and ends 'When in doubt, invoke the skill',
so it routed to skills the user disabled. gen-skill-docs takes
--disabled-skills (runGeneration disabledSkills): the router drops their
routing rules, keeps the other side of an 'A or B' rule, and names them as
disabled. The router and gstack-upgrade cannot be disabled. With no disabled
skills the render is byte-identical.

* G2/G3/INV-1: skill-start former-bucket notice and visible learnings failure; TMPDIR mktemp in gbrain bins; best-effort reasons

* C9: Step 2 falls back to the install registry's source checkout (DX-7)

Codex users who installed from the README's ~/gstack clone got 'ERROR:
gstack not found' from /gstack-upgrade: Step 2 only looked under host skill
directories. It now falls back to the source checkout the install registry
recorded for the current host.

* B4: design --version prints the version, and the probe uses it

The design CLI treated --version as an unknown command (exit 1), so the
probe launched the binary with no arguments instead. Add --version (prints
the gstack version, exit 0, before auth or network) and probe with it, so
messages read '<path> --version exited <code>' as planned.

* C4: no external render points at a section file that is not installed

design-html's detector install offer and plan-eng-review's self-check pointed
at $GSTACK_ROOT/<skill>/sections/<file> on every external host, where neither
skill is carved and no section tree exists. design-html now inlines the offer
off Claude, and a skill's pointer to its own {{SECTION}}-inlined section
names the inlined text.

* C1: skillify finds the browse SDK under its own host's install root

The template hardcoded ~/.claude/skills/gstack for the canonical
browse-client.ts, so external hosts read another host's install or nothing.
A new INSTALLED_ROOT resolver (sibling of INSTALLED_BIN_DIR) names the host's
global root, or the per-install root when setup renders for one.

* C4: rewrite section refs on hosts whose root stays a literal ~/<globalRoot>

Kiro, OpenCode, Cursor and Copilot render ~/.claude/skills/gstack as their own
literal root, not $GSTACK_ROOT, so plan-eng-review's self-check pointer
escaped the rewrite (found by the setup lane's installed-pointer check).

* Integrator: outside-voice fences use the shared runtime prelude; TMPDIR mktemp and per-round variant paths in design templates

* Integrator: C8 router omits disabled skills on every render (relink renders the served Claude router in place); Windows-safe E4/E6 entries; investigate hooks under the cmd.exe check; browse_extension_id reader; order-insensitive test typecheck identities

tsc printed one unchanged ceo-mode-option diagnostic's object members in a
different order (content?/isError?) once lib/fs-utils joined the generator's
import graph; identities now sort object-type members, and old baselines
normalize on read.

* Q1 (#2971 salvage): bound iOS proxy responses

One wall-clock deadline covers headers and body (stalled and dribbling bodies
time out), the whole body is capped at 64 MiB (upstream_response_too_large),
every terminal path clears its timer, removes listeners and destroys the
request, and the daemon threads the deadline through both listeners. Ambiguous
mutations are still never replayed after a timeout or abort. Ported from
#2971's proxy-transport work plus the size bound.

* I1: grade the AUQ matrix's (recommended) marker on option labels, the field the auto-decide hook reads

The decision-brief format puts a Pros / cons block with 'A) ... (recommended)'
in the question text and the same marker on the option label. The matrix
counted both and failed all six skills in periodic run 37151477069 with
'expected exactly one (recommended) option, found 2'. The question-preference
hook reads labels only, so the gate now checks the native question: a
Recommendation line in the question text and exactly one label ending in
(recommended). Fixtures move to the native question shape and add the real
spec capture plus a marker-only-in-text negative control.

* Q1: type the proxy-transport test doubles (typecheck:test ratchet)

* INV-1: gate outcome rows and troubleshooting sections for every lane's new messages

* Release v1.91.19.0 (next free patch in the queue: #3022 holds 1.91.17.0, #3023 holds 1.91.18.0); migration renamed; engines.bun >=1.4.0 to match the CI pin (#2815)

* v1.91.19.0 docs and metadata: CHANGELOG, TODOS, README troubleshooting/upgrade/type --selector, BROWSER.md type and profiles, AGENTS.md conventions, CONTRIBUTING #2949, touchfiles for the wave's new lib/bin files

* I1: give hermetic Codex runs a temp dir beside CODEX_HOME so Codex can create its PATH aliases

Codex 0.160 refuses to create its helper aliases (codex-linux-sandbox among
them) when CODEX_HOME sits under its temp dir, and the runner put the
hermetic home under the shard TMPDIR. Periodic run 37151477069 shows the
warning and 'Unable to spawn codex-linux-sandbox ... No viable candidates
found in PATH' for every exec_command in codex-sol-scope-termination.

* I1: Codex evals fail a review whose commands never ran and stop reading tool errors as skill-load problems

validateCodexReview accepted codex-review-findings in periodic run 37151477069
although its only command failed in bwrap ('I couldn't run the review'); it
now requires execution evidence from classifyOutsideReview (B1's INV-1
classifier). codex-sol-scope-termination failed on 'apply_patch verification
failed: invalid hunk' because the skill-load check matched any 'invalid';
it now matches Codex 0.160's skill-loader diagnostics only.

* I1: run paid eval containers with seccomp unconfined so Codex's sandbox can start

Docker's default seccomp profile blocks the user namespaces bubblewrap needs,
so every Codex command in a paid eval failed with 'bwrap: No permissions to
create a new namespace' (codex-review-findings, run 37151477069). Reproduced
in the CI image locally: default profile fails, seccomp=unconfined runs the
command. The runner stays non-root.

* I1: shared-libs plan actor reads one exclusion grammar for scope lists

Periodic run 37151477069 refused 'Existing-caller migration and helper
hardening stay out of scope' as a hardening proposal: the actor had two
partial exclusion rules (unanchored is/are/remains outside, and an anchored
list that only stays unchanged), the third refusal at this boundary after
36633323521 and 36776104571. One anchored predicate now covers a bare list
of scope nouns (hyphenated compounds included) with is/are/stays/remains and
unchanged/untouched/excluded/out of scope/outside/not part; any other verb
in the clause is still read as a proposal. Adds the real capture and two
adversarial controls.

* Parity caps: measured v1.91.19.0 union/skeleton sizes for ship, review, design-consultation, office-hours and design-shotgun, with the reason beside each

* Regenerate generated output for v1.91.19.0 (gen:skill-docs --host all, goldens, llms.txt, context-budget fixture)

* I1: plan-eng-review writes the Test Plan Artifact even while test choices are pending

Periodic run 37151477069 (plan-eng-review-artifact): a non-interactive review
recorded every Test review choice as pending and never wrote the QA test
plan, because Step 5 said to write the artifact 'when these test and eval
choices are resolved' while the artifact section says to list unresolved
choices as pending. Both now say to write it after the decision gate, with
unanswered choices under Pending Decisions. The pinned sentence becomes a
meaning-level check.

* I3: plan-eng-review states when findings first enter the report and that the scope menu's recommendation needs no repo probe

Judge rationales for 'plan-eng-review/SKILL.md sections' (actionability 3.67
in periodic run 37151477069, clarity 3 in 36385945043 and 35567915613) cite
two concrete tensions: 'do not add findings before Scope Challenge C' versus
the ledger saves C itself performs, and 'Recommendation: A when a branch diff
exists' versus 'do not probe for session state'. The write policy now says
findings first enter through Scope Challenge C's ledger saves; the selector
says its Recommendation line advises the user and needs no repository
inspection. The pinned sentence becomes the new meaning-level regex.

* I3: plan-ceo-review defines the closing sequence's cleanup step

Two of three judge samples for 'plan-ceo-review/SKILL.md modes' in periodic
run 37151477069 (actionability at the 4.0 gate) flag 'perform permitted
cleanup' as never defined. The only cleanup the skill has is archiving old
CEO plans, which needs approval; step 5 now says so.

* I3: /qa-only's value-card rule names only its own card location

qa-only rendered the /qa line 'Put it in the 8e.5 record (/qa) or under each
proposed test (/qa-only)'; judge samples for 'qa-only/SKILL.md workflow'
(actionability at the 4.0 gate in run 37151477069, 3.67 in 36907895813)
flag the /qa-only-irrelevant 8e.5 record. The qa-mode bar now renders the
invoking skill's location; both skills get shorter.

* test-of-test ratchet: a repo script or setup read by path counts as product code

codex-invocation-sites (runs scripts/gen-skill-docs.ts), gstack-config-gbrain-refresh
(copies bin/<name> through a variable) and setup-cso-windows-probe (reads setup and
scripts/build-cso-windows.ps1) exercise product code the detector could not see.

* I1: DX floor actor strips the editor hint from the footer line only (from #2971)

The custom-field reply normalization removed 'ctrl+g to edit in <editor>'
from every line, so question text that resembled the menu footer could be
rewritten and still authenticate. Only the last non-empty line is the
footer. Ported from Garry's #2971 with its negative control.

* I4: attribute every census testcase; deselections never count as SKIPPED

The paid report counted every skipped JUnit testcase as SKIPPED and every
testcase whose name was not a registry id as unattributed. On the 2026-10-03
census (run 37151477069) that was SKIPPED 82 / unattributed 72 (periodic) and
SKIPPED 282 / unattributed 24 (gate), and every case-shard sibling also wrote a
skipped history record that reset its pass-rate series.

- attributeJUnitCase: a name is its registry id or CASE_TEST_NAMES label, else
  the only id its file registers, else the keyless file itself. Skipped
  other-tier cases, case-shard siblings, isolated or unselected cases and Bun's
  '(unnamed)' hook placeholders are zero-credit deselections with a reason and
  write no history record. Anything else is listed by name as unattributed.
- One result and one history record per case per shard; a genuinely skipped
  selected case counts as SKIPPED and is listed with its reason, also in
  report-summary.md and collector-outcomes.json. SKIPPED panels show their
  reason and skipped trials are no longer called assertions.
- CASE_TEST_NAMES labels for the three /cso cases.
- tierSkipReason: a computed registration whose lane-tier ids are all
  registered to other test files is excluded at plan time, so the four gate
  and two periodic files that ran with every test skipped no longer take a
  runner.

Census rerun: periodic SKIPPED 0 / unattributed 0, gate SKIPPED 0 /
unattributed 0; verdicts unchanged.

* I5: split the deploy file per case; guard PR-lane shard walls at 600 s

test/skill-e2e-deploy.test.ts ran 668 s as one gate shard in the 2026-10-03
census (six sequential cases, 51-201 s each). It is now case-sharded, so each
case is its own shard with its own (smaller) supervision budget; no timeout
or budget was raised.

- CASE_SHARDED_FILES gains the deploy file (names already equal ids).
- Gate duration seeds for the six case keys from the census JUnit walls, so
  packing stays at 12 gate-census slices (CI cap 230m -> 200m).
- shardDurationViolations + PR_LANE_SHARD_LIMIT_MS: a free test fails when a
  planned gate shard's recorded wall (committed seed, and the last gate census
  in test/fixtures/paid-report-census/gate-census-durations.json) exceeds 600 s.
- Tests that pinned deploy as one shard follow the split (cookie planner keys,
  reuse fixture key, release/PR floors).

* TODOS: /review fingerprint under Codex's read-only .git sandbox (found by the live Codex check)

* Free-suite repairs from the first integrated Ubicloud run

Product:
- Outside-voice fences carry runtimeRootPrelude(ctx) explicitly again, so the
  resolver output runs on its own (the post-render pass skips fences that
  already assign GSTACK_ROOT); outsideVoiceRuntime stays deleted.
- D5: an explicit CHROMIUM_PROFILE (gbrowser's per-workspace gbd) is never
  seeded from the shared profile or registered for `browse profiles prune`;
  this was also the free suite's write to the real ~/.gstack/browse-profiles.json.
- gstack-ios-qa-daemon: BASH_COMPAT=50 for its >512-byte --help heredoc.

Tests migrated to the wave's deliberate contract changes:
- B1 heading admits `unverified`; sandbox flag is ${_GSTACK_CODEX_SANDBOX:?};
  verdict-form output (VERDICT/FINDINGS/REASON); fake codex follows the
  preflight + stdin + -o form; Q2 notice marked shown in a private state root.
- C1: an exported root needs bin/ and lib/; a lone GSTACK_BIN is not honored.
- C4: plan-ceo-review is carved on every host (carrier, discovery and
  methodology fixtures read sections/ when the render has it).
- E7: READY prints the resolved Aside path.
- INV-3: the cookie-approval reconstruction reverses the bun-install mktemp template.
- F1's `Plan:` binding read gets a reasoned tracker-guard exemption.
- Browse stubs stop their server instead of scheduling process.exit; the
  headless launch check only counts browsers its own launch started.

* Regenerate generated output after the outside-voice prelude repair

* I1: revert the seccomp-only eval container option; it does not let Codex's sandbox start

Run 37158847998 on this branch and a stock Ubicloud VM both show that
seccomp=unconfined only moves bubblewrap's failure from 'No permissions to
create a new namespace' to 'Failed to make / slave: Permission denied'.
Codex's sandbox started only with the host sysctl
kernel.apparmor_restrict_unprivileged_userns=0 plus seccomp and AppArmor
unconfined on the container, which a container job cannot set from its
steps. The relaxation bought nothing, so it goes; the fix is filed as a
TODO for the integrator.

This reverts commit ec97187.

* I1: a Codex review eval needs a completed command, not just review-shaped text

Run 37158847998 recorded codex-review-findings as passed again: the agent
wrote 'I couldn't run the review because the execution sandbox failed
(bwrap: Failed to make / slave)', the failure never reached stderr or a
command event, and no phrase rule matched. validateCodexReview now also
requires at least one command_execution event that completed with exit 0.
Fixtures gain that event; the CI output is a new negative control.

* Evals lane follow-ups: close the skillify gate TODO (I2 green), file its open reds, CHANGELOG lines; refresh measured parity annotations

* Regenerate generated output after merging wave/evals

* D2: bound the navigation guard's tab reset (commit, 5 s)

Ubicloud run 3: a click to a link-local link reported the block, but the
reset's page.goto('about:blank') waited the full 30 s default navigation
timeout, so the command hung past the test deadline and the stale block
leaked into the next command. The reset now waits for commit only, with a
5 s bound.

* I1: run Codex paid slices on a host-run job where bubblewrap can start

Docker's default seccomp/AppArmor profiles and the Ubuntu 24.04 host's
kernel.apparmor_restrict_unprivileged_userns=1 keep Codex's bubblewrap
sandbox from starting in a job container, so every Codex command failed.
The planner now packs Codex shards into their own slices (plan.codexSlices,
validated against the entries); evals-periodic runs those slices on a new
host-run job that lifts the host restriction and runs the same CI image
with seccomp and AppArmor unconfined. Artifact names match eval-slices,
so the report reconciles one manifest. Gate plans have no Codex slices.

* I1: the /codex review eval passes only when Codex executed

Run 37158847998 recorded codex-review as passed while the sandbox
preflight said unavailable and no review ran: the case only checked the
session exit and an optional output file. It now requires the shared
validator's executed verdict (findings, clean or unverified) in the
codex command's own output and a written, non-fail-closed GATE.

* TODOS: characterize the free-suite timing reds from Ubicloud run 4

* I1: QA evidence names the probes to rerun after an input change, before the one-shot materialize

ship-exploratory-late-input returned inconclusive in gate census 37158847998:
the fixture locale changed after captures 001 and 002, the agent reran only
input 9, and materialize (which publishes once) recorded capture 001 as open.
Its next line then said to rerun what is open, which the published verdict no
longer allowed. Every capture now lists the commands that observed an older
input snapshot and have no rerun on current inputs (revalidate, plus the next
line), and materialize's next line says the verdict is final.

* I1: the eng batching counter reads records under "Section N — <review> review" headings

plan-eng-multi-finding-batching failed in 6 of 12 runs with reviewCount 0-1
(or a timeout with every ask counted as Step 0). In run 37158847998 the agent
asked 11 separate questions, each with a saved ledger record, but filed
records R2-R10 under '## Section 1 — Architecture review'. The counter strips
'Section 1' but not the dash separator, so it rejected every record outside
the Decision ledger and the floor never filled. Quoted, historical and
unrelated headings still do not count.

* I1: plan-eng-review-artifact names its report file without making it the only output

Runs 37151477069 and 37158847998 wrote the whole review, including the
GSTACK REVIEW REPORT, into review-output.md and never ran the Test Plan
Artifact block. #3017 made the artifact a hard assertion and dropped the
prompt's explicit artifact instruction, leaving 'Write your review to
review-output.md' as the one named destination. The prompt now names that
file as the selected report file and says every other output keeps the
destination the skill gives it, without naming the artifact.

* browse: close returns when Chromium exits; Xvfb cleanup does not wait on its own zombie

BrowserManager.close() detached every 'disconnected' listener before
browser.close(). That also removed Playwright's internal listener that
resolves close(), so every launched-mode close waited the full 5 s race
timeout (measured 5,000 ms on origin/main and on this branch; raw Playwright
closes in ~50 ms), and Playwright 1.62 has no Browser.process() for the
SIGKILL fallback. The daemon's SIGINT shutdown therefore took over 5 s, which
reddened the CLI lifecycle test under load (1 of 8 on main) and left browsers
alive at shard cleanup. gstack now detaches only its own listeners: close
takes ~50 ms.

cleanupXvfb treated a terminated Xvfb child as alive until our own blocked
event loop reaped it, so every close waited a full second then sent SIGKILL
to a zombie. A zombie now counts as exited; the display test counts only
running Xvfb processes.

* I1: office-hours-brain-writeback reads the long skill with Read and skips the preamble

4 of 18 trials ended error_max_turns at the unchanged 12-turn budget with a
gbrain search but no gbrain put. The failing trial in 37151477069 read the
1260-line rendered SKILL.md with cat, got truncated output, spent four more
turns re-reading it with sed, then ran the preamble's skill-start block. The
passing trials skipped the preamble. The prompt now says to read the skill
with the Read tool and skip the preamble, onboarding, telemetry and
contributor sections, as the plan-eng fixtures already do. Budget unchanged.

* CI: no credential-shaped URLs in added lines (quality scan); release floor measured on the merged tree

The quality job's credential scan of the PR diff flagged 7 db.url_with_password
lines: three docs lines now describe the login instead of spelling a URL, and
three tests build the URL from parts. paid-retry-supervision's periodic release
floor is the merged tree's measured 35,711 (main's value; the evals lane's
33,821 predates main's new paid files).

* qa-evidence: hold the stdout-pipe cases on a FIFO, not on a paused child stream

Ubicloud run 4 finished the blocked-forever case in 71 ms (it should take the
5 s write deadline): the 2 MB write was not held, because saturation depended
on how the runtime buffers a paused child pipe. On POSIX the child's stdout is
now a FIFO the test reads only when it chooses to, so the kernel holds the
write; Windows keeps the paused pipe.

* TODOS/CHANGELOG: the three run-4 timing reds are fixed at their causes (daemon close latency, FIFO-held pipe tests)

* I1: a QA helper call bun could not load is checked at the installed path, not failed outright

review-exploratory-small-cli failed gate census 37162480720 with 'command
outside declared caller observation interface': the actor dropped one
character from the shard directory in a gstack-qa-evidence capture path, bun
refused to load it ('Module not found', exit 1), and the next call ran the
same capture correctly. A failed call whose only output is bun's refusal for
a gstack-qa-evidence/deadline path is now held to the interface as the same
command at the installed helper path, so a compound or undeclared command
still fails.

* I1: plan-eng-review's final self-check names its three outputs

The fixture-prompt repair did not hold: in 37162480720 plan-eng-review-artifact
again wrote one review-output.md, ran the skeleton's read-back gate on it and
stopped without the QA Test Plan artifact (no gstack-paths/gstack-slug block).
The transcript shows the agent's last check before finishing is the skeleton's
Section self-check, which said only 'and outputs'. It now names the saved
report, the QA Test Plan artifact and the Review Log, each at its own
destination or presented as not persisted (the existing write policy).

* I1: revert the plan-eng-review self-check wording; it did not change the artifact outcome

A local run of plan-eng-review-artifact in the CI image (Claude Code 2.1.284)
at e2f65ab22 still wrote one review-output.md in 8 turns and ran no Bash, so
the QA Test Plan artifact block never ran. Keep the skill text unchanged; the
case is deferred with its evidence.

* I1: seed the Codex files' periodic durations from their first executing run

Every Codex file recorded ~1 s because its commands could not start in the
container (codex-e2e*, outside-voice, workflow). Run 37162480720 executed them
on the host-run job; its slice 24 walls replace the placeholders so the
planner packs the Codex slice by real work (7 files, ~4.9 min estimated).

* Refresh scripts/free-test-durations.json (bun run test:ubicloud --record-durations; covers the wave's new test files)

* evals2 follow-ups: outside-voice-evidence helper in five case touchfiles; close the evals lane's Codex-CI, late-input, batching and brain-writeback TODOs (run 37162480720); CHANGELOG lines

* fix(browse): take the next free X display when a concurrent allocator wins the race

Pick-then-spawn let two allocators (parallel daemons or test shards) choose
the same free display; the losing Xvfb exited and the handoff failed (run 6,
handoff 'failure before launch'). spawnFreeXvfb now treats a display taken
during startup as a collision and moves on. Regression test forces the race
with a delayed Xvfb wrapper (pre-fix: fails; two-process repro 13/15 -> 0/15).

* test(ci): read the host-run Codex eval job's docker env, mounts and uploads

eval-codex-slices runs on the host and passes its executor env through docker
-e flags and HOME through a $RUNNER_TEMP/eval-home mount. The evidence and
coordination tests now map those back to the container view instead of
assuming job.container, and the job's native-capture upload carries the
qa-callers paths like the other executors.

* I1: plan-eng-review-artifact runs the real interactive review in a PTY, replacing the composing fixture

The claude -p case told the model to skip the preamble and questions and go
straight to the review. In 37151477069, 37158847998, 37162480720 and a local
CI-image run it wrote the whole review into one file without executing the
workflow, so it measured composing, not /plan-eng-review. The interactive
batching PTY run in 37158847998 did write the artifact during Test review, so
there is no product defect.

New test/skill-e2e-plan-eng-artifact.test.ts keeps the case id, tier
(periodic), kind (rule) and budget (CAPTURE_LONG_MS): it drives the real
/plan-eng-review over the same dashboard plan and sources, answers each
question with its first option, stops once the QA test plan exists or the
report completes, and asserts the same requirement (exactly one new
eng-review test plan in the run's own state root, about the dashboard change).
The composing case is retired from skill-e2e-plan.test.ts in this commit.
runPlanSkillCounting reports engTestPlans (read before fixture cleanup) and
passes them to isCollectionComplete. One paid run in the CI image (Claude Code
2.1.284): pass, collection_complete at 498 s with one test plan.

The new file takes its own periodic runner (seeded at 498 s), so the periodic
census plans 26 slices: the planner's --max-parallel and both executors' caps
move from 25 to 26 so every slice still starts at once; the paid-file census
pin moves from 106 to 107.

* evals2 final: plan-eng-review-artifact touchfiles point at its PTY file and helpers; plan file wall drops the moved case

Applies the lane's touchfiles-data patch (its outside-voice-evidence hunks
were already in 9a96fb3). skill-e2e-plan.test.ts lost one 600 s case to
skill-e2e-plan-eng-artifact.test.ts, so its periodic wall is two 900 s + two
600 s (3,000,000 + reserve) and its timeout pin lists the remaining cases.

* TODOS/CHANGELOG: close plan-eng-review-artifact (real PTY review, 498 s pass)

* test: plan-eng-review-artifact is a PTY runner consumer (selected by claude-pty-runner and pty-screen changes)

* test(windows): spawn cmd.exe hooks verbatim, use a .invalid UNC host, and match CRLF fixtures and native separators

windows-free-tests reds on 364f0f3, each verified on windows-latest
(46 pass, 1 POSIX-only skip, 0 fail):
- investigate-freeze-path cmd.exe cases: Bun MSVC-quoted the command line
  cmd.exe parses, so cmd saw \"bash and failed; Node's shell spawn (what
  Claude Code uses) passes it verbatim.
- investigate-freeze-path UNC cases: a single-label host made each
  filesystem probe wait on network name resolution (cd 11 s, -L 2.8 s);
  a reserved .invalid host fails at once (55-80 ms).
- paid-report-census: the junit fixture is CRLF in a Windows checkout.
- codex-invocation-sites: rendered paths use backslashes on Windows.

* eval(plan-design-with-ui): the Step 0D focus title may spell the seven dimensions as a word

Run 37166586458 slice 5 (dfaf154) asked 'D2 - Review all seven design
dimensions, or focus on specific areas?' and reached its review finding,
but the focus predicate only accepted the numeral, so the case failed with
no acknowledged Design focus. Both recognizers accept 7 or seven; the
byte-exact capture is a free regression, and engineering/other-count/
no-'design' titles stay rejected.

* eval(ship-docsync): git check-ignore is a declared read in the docs observation interface

Run 37166586458 slice 2 (dfaf154): ship-docsync-completion's parent ran
'git check-ignore -v .qa-state' to verify the prompt's claim that the
observer probe is Git-excluded. The read was outside the closed Git list,
so the run's DOC_PATH replacement was unprovable and failed. check-ignore
cannot write; it joins the list and the interface prose. Free regression
replays the captured command against the fixture and keeps composition and
redirects rejected.

* fix(browse): read Xvfb's own startup error to classify a lost display race

Run 10 (1ffd38e) failed handoff's concurrent promotion once: 'Xvfb on :100
exited during startup (code 1)' with the display free again by the exit
check, so a holder that won the lock and closed within the 100 ms poll
looked like a broken install. Startup stderr now goes to a private file;
'Server is already active for display' is a collision and moves on, and any
other startup exit carries Xvfb's fatal line. Regression: a stub that
reports the collision for one display and exits leaves spawnFreeXvfb on the
next display (pre-fix: the misleading install error).

* test: merged-main fixtures (E6 copies the Claude render library gstack-config now sources; the census fixture's plan-mode-no-op budget follows its v1.91.18.0 policy)

* qa: materialize runs once per PROBE_DIR, and qa-only says §1 reuses the REPORT_DIR it resolved

Run 37170610789 slice 3 (feaa28d): the qa-only workflow judge scored
clarity 3.33 and named two ambiguities: §4 said materialize runs once per
report root while mixed runs materialize each surface's PROBE_DIR, and
SKILL.md deferred exploratory §1 without saying §1 reuses the REPORT_DIR
resolved under Prepare Report Artifacts. A local run of the same judge on
the repaired text: clarity 3.67, completeness 4.33, actionability 4 (pass);
all three samples call the workflow internally consistent.

* Regenerate generated output for the qa materialize/REPORT_DIR wording

* eval: three detector defects from run 37170610789 (feaa28d)

- safety-codex-consult-embed: the fake codex recorded argv only, but every
  codex exec takes its prompt on stdin since E5; it records stdin for the
  '-' form and the check reads both.
- ship-docsync-missing-asset: 'ls ... 2>&1' on a read-only command is the
  same harmless stderr wrapper as '2>/dev/null'; stdout redirects, pipes
  and script calls stay rejected.
- qa-functional-webhook-fix: a pre-repair capture whose command reran on
  the repaired inputs may be classified superseded (exploratory §4); the
  evidence check accepts that and still rejects superseded on a post-repair
  capture or one never rerun.
Each free regression fails without its repair.

* fix(test:free): a browser record removed mid-read by a shutting-down daemon is absent

Run 13 (feaa28d) needed the flaky-retry for 'owned detached browser
settlement > cancel': 2 unattributed failures instead of 1. A 16-vCPU
stress run reproduced it once in 64 with the cause:
'browser ownership unavailable'. On SIGINT the cancelled daemon removes its
state file; record() saw it exist, then lstat/read hit ENOENT, which
failure() reports as an ownership error. ENOENT there now means absent.
New mode cancel-vanishing-record forces the removal between the check and
the read (pre-fix: 2 unattributed, deterministic; now 1).

* test(windows): the 2>&1 wrapper regression uses relative reads (no native paths in literal commands)

* test(plan-seed): wait for the fixture CLI's slash event instead of a fixed 50 ms

Run 14 (b2f729b) needed the flaky-retry for 'startup-placeholder': the
events log had paste/enter/end_turn but not yet the slash 50 ms after it
was sent. The check now polls (bounded 5 s); the deadline assertion
measures when submission settled, which is what it bounds. One test
typecheck diagnostic goes away with the typed reader.

* eval(plan-design-with-ui): recognize the Step 0D focus question by meaning, not one title spelling

The b2f729b gate run titled it "I've rated this plan 5/10 on design
completeness. Review all 7 dimensions, or focus on specific areas?", the
third native wording to miss a spelling-pinned regex. The native form is
now a class: a title that offers all seven (numeral or word) dimensions or
passes versus a focus and names design. Captured titles from 37166586458
and this run pass; other counts, engineering passes, titles without design
or without a focus stay rejected.

* eval(shared-libs-read-only): curl answers the provider rate-limit probe with the same 404 as gh

Gate census 37174266054 slice 9: the model probed API availability with
curl -o /dev/null https://api.github.com/rate_limit (GET, discarded). The
gh transport already answers rate_limit as an unknown endpoint (404); the
curl transport refused it, and the refusal counted as a read-only
violation. curl now gets the same 404. POST, file output, other repos and
raw hosts stay refused. Paid rerun (gate, 1 trial): PASS in 177 s.

* eval(shared-libs-plan-callers): an exclusion may combine states (unchanged/out of scope)

Periodic census 37174266054: every option ended 'Scheduler semantics,
existing callers and helper hardening stay unchanged/out of scope', which
the actor read as proposing hardening. Exclusion states may now be joined
by '/', 'or' or 'and'; the captured question is answered, and clauses that
pair a state with a real change ('stay unchanged/harden the helper') are
still refused. Paid rerun (periodic, 1 trial): PASS in 296 s.

* paid: --case plan-eng-review-artifact selects its PTY test by its registered name

A local --case run matched 0 tests (no spend): the PTY test's Bun name is
not its case id, and CASE_TEST_NAMES had no label for it.

* eval(plan-eng-review-artifact): periodic checkpoint resumes at Test review; the fresh full run moves to marathon

A fresh interactive /plan-eng-review cannot reach Test review inside the
600 s periodic budget: startup plus one-at-a-time Scope Challenge questions
took 595 s with six questions and no Test review in census 37174266054 and
in a local run (one earlier fresh run passed at 498 s). Per the eval-speed
policy, the long run moves to the non-blocking marathon lane and the
blocking case becomes a focused checkpoint.

- plan-eng-review-artifact (periodic, 600 s unchanged): resumes the real
  interactive skill from a saved review record: the plan, the Scope
  Challenge result, Sections 1-2 complete, and a Decision ledger rebuilt
  from that census run's six actual native questions and answers
  (test/fixtures/plan-eng-artifact-resume-37174266054.json). The live skill
  runs Section 3, Test review. Assertion unchanged: exactly one new
  eng-review test plan in the run's own state root, about the dashboard
  change. Paid trial (local, Claude Code 2.1.284): PASS, 364 s.
- plan-eng-review-artifact-full (marathon, PTY_LONG_MS): the fresh
  start-to-finish run with the same assertion; budget measured beside it.
- test/plan-eng-resume.test.ts proves the rebuilt record is a valid resume
  point and rejects missing, unanswered, edited or duplicated records.
- Registry: touchfiles, tiers, kinds, test-name labels, durations, paid
  file count 115, PTY consumer list; CHANGELOG and TODOS.

* setup-deploy: say which deploy fields count as confirmed, how to resolve the default branch, and group the detection tests

Periodic census 37176837432: the setup-deploy workflow judge's actionability
mean was 3.67 (4, 4, 3). The low sample named the Fly/Heroku/Railway/GitHub
Actions deploy trigger left undefined until Step 4's 'not already confirmed'
catch-all and an unstated way to find <default branch>, and misread
'A || B && C' detection lines. Step 4 now defines a confirmed field and names
the paths that leave the trigger unset, <default branch> resolves with
gh repo view, and the two OR'd detection tests are grouped explicitly (same
behavior). One judge run on the repaired text: 4/4/4, pass.

* Regenerate generated output for the setup-deploy wording

* TODOS: census data for the skipped CEO mode handoff (mode-routing, auto-decide-preserved); floor runner Edit-permission parse under collapsed TTY spaces

* fix(browse): a blocked navigation that fails at once leaves the tab blank and the next command clean

PR CI on 8d2d269 (free-suite 3): the redirect to [::ffff:169.254.170.2]
failed immediately on the runner, so its chrome-error page committed around
the guard's about:blank reset, and leaving the error page committed a
second about:blank after the reset resolved, interrupting the next three
tests' gotos. The guard now lets the blocked request settle (bounded at
1 s; a hanging target is still cut off by the reset), resets, and waits for
the main frame to stay quiet before returning. Regression: a redirect to a
blocked address on Chromium's unsafe port 1 fails at once (pre-fix: blank
check and the next goto fail, deterministically).

* qa: the checkpoint note is created for browser runs and composed for functional ones

Periodic census 37178143007: the qa-only workflow judge scored
actionability 3.67 again; one sample read step 2's 'Create
exploration-NNN.json' as applying to functional runs before reaching
'Functional: do not write this file'. The sentence now names both surfaces
up front; byte-neutral (the browser line drops its restated clause), qa
union 1.1098 under its 1.110 cap. One judge run on the repaired text:
3.67/4/4, pass.

* Regenerate generated output for the qa checkpoint wording

* eval(section-loading): byte-range prints of a section count as a complete read

Periodic census 37178143007: plan-ceo-section-loading printed
review-sections.md in five byte ranges (head -c 16000, then tail -c +N |
head -c 17000, one-byte overlaps) and the detector, which matched whole
printed lines, saw the lines split at each range edge as missing. Outputs
of the commands that name the section are also joined on their overlap.
Regression: the captured ranges count; dropping a middle range or the last
range does not (pre-fix: the complete ranges were refused).

* test(plan-design-review): count design terms the review wrote into the plan

* fix(aside): probe names the platform (GSTACK_PLATFORM override) so the macOS pitch never re-probes the OS

* fix(plan-ceo-review): Step 0E mode handoff runs gstack-ceo-mode-handoff so the selected mode is printed, not only composed

* chore: refresh context-budget fixture

* test(auto-decide): accept Step 0E's documented AUTO_DECIDE line with its decisions suffix; replay the captured trial

* docs: CHANGELOG and TODOS for the CEO mode handoff and platform line

* test(plan-design-review): plan-term credit needs a rated summary; adapter regression for census 37179171083

* test(auto-decide): the printed handoff may precede Step 0E's provenance log; replay census 37182865432; TODOS for two rotating census reds

* test(plan-ceo-section-loading): read the skill's ledger and currentDecision records for the stale-fill decision; replay three census reports

* test: $B counts as a browser call only in command position; qa functional prompt defines its classification values

* test(shared-libs-plan-callers): a verbless unchanged-scope list is an exclusion; replay census 37186854666; TODOS for two census reds

* fix(settings-hook): retry a lock released between mkdir and the existence check instead of dropping the mutation

* test(ship-docsync): the child's reply to a parent SendMessage counts as its spawned-marker report; replay PR run 37188668421

* test(browse): Xvfb stub-failure tests allocate from ranges no other allocator uses

* perf(ship): documentation gate snapshots and compares its candidate with gstack-docs-candidate

* fix(review): unverified Codex mode runs the passes in the mode summary too; stale-fill decision check accepts any ledger row ID

* test(shared-libs-plan-callers): judge scope by forbidden verb+object actions, not an exclusion grammar; replay six refusals and four passing censuses

* test(shared-libs-plan-callers): type the brief-line parameter

* test(ship-docsync): an inline-code status quote is not a false current claim; replay PR run 37196811165

* fix(review,ship): Codex challenge and structured-review bodies run in unverified mode, matching their headers

* docs(TODOS): overlay-harness control-arm error and format-approach provider refusals, with run links

* docs(TODOS): qa-only workflow judge data point

---------

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2026-10-04 07:58:41 -07:00
+21 ae8914af7e v1.67.0.0 fix: the tracker wave — XProtect self-heal, complete installs, brain-sync integrity, 31 community PRs credited (#2604)
* fix(test): host-config goldens self-provision .agents/.factory artifacts

Fixes #2532. The codex/factory golden tests read gitignored artifacts that
only gen-skill-docs.test.ts (serial tree-mutating phase) produces, so the
file failed in isolation and on clean clones (the #2536 "3 failures then 0"
symptom). beforeAll now generates a host's artifacts iff its ship SKILL.md
is missing — never overwriting existing ones, so stale artifacts still fail
the golden. The file is also classified TREE_MUTATING so its provisioning
runs in the serial window, not racing parallel readers.

Verified: full pass with .agents/ and .factory/ deleted (74/74 in isolation).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): exempt the live repo tree from hermetic-wiring's operator-~/.claude ban

The skill-seeding tripwire asserted every seeded symlink target must NOT
start with ~/.claude — but on the default global-git install the repo
itself lives at ~/.claude/skills/gstack, so every CORRECT symlink (which
must resolve into the live repo tree, as the very next assertion requires)
carried the banned prefix. The test could never pass on a default install:
pristine v1.64.1.0 (c118e240) fails it in any worktree under
~/.claude/skills/ and passes elsewhere (verified 2026-08-15).

Exempt targets that realpath into the resolved repo ROOT before applying
the operatorClaude ban — realpath both sides so a symlinked HOME can't
dodge the tripwire. Genuine escapes (a target under ~/.claude but outside
the repo) still fail with the escape message.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(gen-skill-docs): quote YAML inline scalars containing '...' (Bun strict parser breaks on bare ellipsis)

A bare ... inside a plain YAML scalar is a document-end marker that strict
YAML parsers (Bun.YAML among them) reject mid-scalar. catalog-trim truncation
appends '...' to any description whose lead exceeds 200 chars, so any
truncated description would generate a SKILL.md with unparseable frontmatter.
Add the ellipsis test to toYamlInlineScalar's needsQuote so such scalars are
emitted double-quoted, plus unit coverage for the quoting rules.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(gen-skill-docs): throw when a template contains {{PREAMBLE}} twice

Hardens the #2508/#2362 class: a second {{PREAMBLE}} occurrence — even a
prose mention, which is exactly how spec/SKILL.md.tmpl re-expanded the full
~12K-token preamble mid-document — now fails generation with the template
path instead of silently shipping a doubled preamble. Pure exported guard
(assertSinglePreamble) called from resolvePlaceholders, unit-tested with the
original prose-mention shape.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): classify catalog-trim.test.ts as tree-mutating

Discovered while landing the duplicate-{{PREAMBLE}} guard: importing
scripts/gen-skill-docs.ts executes its top-level body, which regenerates the
entire claude host (71 GENERATED files) at import time. catalog-trim.test.ts
does that import from a PARALLEL shard — the same read-during-regeneration
hazard class as #2532, invisible only because the regen is byte-identical on
a fresh tree. Move it to the serial tree-mutating window.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): prepush hook test builds PATH with a POSIX-only separator

`test/redact-prepush-hook.test.ts` shadows `git` with a stub by prepending a
temp dir to PATH, built as `${stubDir}:${process.env.PATH}`. On Windows the
separator is `;`, so that produces one unparseable entry, the stub is never
found, and the REAL git runs — the diff succeeds, `gitStrict` never throws, and
the hook exits 0 where the test expects 1. It fails as a wrong assertion rather
than as a portability problem, which is what made it hard to place.

Replace it with a `prependPath` helper mirroring the one already in
test/gstack-brain-context-load.test.ts, which handles both platform details:
`path.delimiter`, and a case-insensitive lookup of the existing env key —
Windows commonly spells it `Path`, and adding a second `PATH` alongside an
inherited `Path` leaves the winner up to the spawn implementation.

On POSIX the helper resolves to `{ PATH: binDir + ":" + process.env.PATH }`,
byte-identical to the expression it replaces, so behaviour there is unchanged.

Fixing the separator alone does not make the test pass on Windows, and it
cannot: the premise is that a signal-killed child yields `spawnSync`
status === null, and Windows has no equivalent (a force-killed process reports
a non-zero exit code). The stub is also a `#!/bin/sh` file named `git`, which
Windows will not execute, since process creation resolves through PATHEXT and
ignores the shebang. A Windows variant would assert the non-zero-exit branch
instead — a different branch than the test name claims — so the test is gated
with test.skipIf(process.platform === "win32"), matching
test/session-runner-timeout.test.ts and test/setup-emoji-font.test.ts.

Windows before: 14 pass, 1 fail. After: 14 pass, 1 skip, 0 fail (3 consecutive
runs). Unchanged on POSIX, where it should still run and pass — worth
confirming in CI, since I can only verify the Windows half here.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* fix(artifacts): sync the decision store, which no allowlist glob matched

gstack-decision-log enqueues projects/<slug>/decisions.jsonl after every write,
but none of the 16 managed globs matched it, so compute_paths_to_stage rejected
every one at its "must match at least one allowlist glob" check.

The writer and the syncer disagreed silently: enabling artifacts sync backed up
learnings, plans, designs and timelines -- everything except the durable decision
ledger -- and nothing reported a miss, because a dropped path prints exactly what
a synced one does when the queue is otherwise empty.

Add the three decisions.* globs and class them artifact so they also sync in
artifacts-only mode.

The test reads the heredocs out of the script rather than executing it:
gstack-artifacts-init.test.ts drives the real script through #!/bin/bash shims and
a colon-separated PATH, so it cannot run on Windows -- the platform where the
companion slug bug bit.

* fix(windows): resolve the project slug natively when gstack-slug cannot spawn

bin/gstack-slug is a `#!/usr/bin/env bash` script with no file extension. Windows
honors neither the shebang nor PATHEXT for an explicit path, so spawnSync fails
ENOENT and resolveSlug returned its literal fallback, "unknown".

Every decision on the machine was therefore filed under
~/.gstack/projects/unknown/ -- one bucket shared by every project -- while the
bash-side Context Recovery preamble resolved the real slug, found no
decisions.active.json there, and skipped through a bare `if [ -f ... ]` with no
else.

Nothing failed. Both decision bins (log and search) missed identically, so writes
and searches stayed consistent with each other, and the only component that
resolved correctly was silent by design. Measured on one machine: 62 decisions
accumulated over 10 days and 170 skill runs, surfaced zero times.

shell:true is not the fix here, unlike #1731 -- cmd.exe cannot run a bash script
either. Nor is re-spawning through `bash`: on Windows that frequently resolves to
WSL, whose $HOME and /mnt/c paths yield a different slug AND a different cache
directory, trading one split store for another.

Instead, port gstack-slug's own three steps (cache -> git remote -> basename),
keeping its alphabet and its MSYS-form cache key so both paths agree. The
fallback is win32-gated, so POSIX behaviour is byte-identical.

Tests exercise the fallback on every platform (only the gating is win32-specific),
so POSIX CI catches a regression that would otherwise surface only on a Windows
user's disk, plus a static gate pinning the platform check.

* fix(security): guard brain-sync arithmetic against injected .brain-last-pull; sanitize _GBRAIN_HOST

Re-derived from PR #2588 under the generated-file screening rule (resolver
hunks taken; SKILL.md files regenerated, not accepted). A poisoned
.brain-last-pull could reach bash arithmetic ($(( ))) — a code-execution
vector from a writable state file; the timestamp is now validated numeric
before use. _GBRAIN_HOST from ~/.claude.json is clamped to hostname-safe
characters before echo. Ship goldens refreshed to the regenerated output.

Co-authored-by: sneakygriff <89592870+sneakygriff@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(sync): run gstack-brain-sync through bash, not cmd.exe, on Windows

The brain-sync stage failed on EVERY Windows run with "is not
recognized as an internal or external command", so /sync-gbrain always
reported ERR brain-sync among otherwise green stages.

#1731 gave these spawns shell: NEEDS_SHELL_ON_WINDOWS. That is correct
for the gbrain.cmd shim and does nothing here: shell:true routes through
cmd.exe, which resolves .cmd/.bat via PATHEXT but has no concept of a
shebang, so an extension-less bash script is rejected outright. A .cmd
shim needs a shell; a shebang script needs an interpreter. The two cases
look identical and are not.

The failure was quiet rather than loud. artifacts_sync_mode defaults to
pushing curated artifacts to git, so a Windows user's learnings piled up
uncommitted in ~/.gstack indefinitely while the sync report showed one
red line out of four.

New bashScriptInvocation() resolves Git for Windows' bash explicitly and
passes the script as argv[0]. It prefers Git bash over a bare `bash` on
PATH because WindowsApps ships a bash.exe that is the WSL launcher, which
would read C:\... as a Linux path; GSTACK_BASH overrides for unusual
installs; forward slashes because bash treats backslashes as escapes; and
it returns null when no bash exists so the stage says so plainly instead
of surfacing an unactionable spawn error.

The #1731 tripwire asserted the shape that does not work, so it now
asserts the opposite (never a raw spawnSync(brainSyncPath, ...)) and six
unit tests cover the resolver.

Verified on Windows: the stage now reports "OK brain-sync curated
artifacts pushed (4.2s)" and the artifacts repo committed + pushed on its
own. Affected-test set unchanged at 14 pre-existing failures before and
after, with 6 new passing tests.

* fix(gbrain): quote cmd.exe arguments at a single gbrain invocation seam

Fixes #2471. With shell:true on Windows, node/bun join argv into one cmd.exe
string without quoting, so a repo path with a space — the default
C:\Users\First Last\ layout — split into two arguments and every gbrain call
carrying a path silently targeted the wrong location (worst: `sources add
--path`). All gbrain CLI invocations now build their (cmd, argv, shell)
triple through gbrainInvocation(), which quotes risky arguments for cmd.exe's
re-parse (embedded quotes doubled). The four direct spawn sites in
lib/gbrain-sources.ts route through the seam; the #1731 static invariant is
upgraded for seamed files (any direct "gbrain" opener is the violation) and
kept as-is for lib/gbrain-local-status.ts. POSIX behavior unchanged
(shell:false, passthrough argv).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(brain-sync): classify queue entries, rewrite surgically, re-push stranded commits

Fixes #2549 (P0 data loss). Every drain exit previously truncated the WHOLE
queue (six `: > "$QUEUE"` sites), which (a) destroyed privacy/mode-held
entries while misattributing them as "no allowlisted changes", (b) destroyed
entries enqueued concurrently during the drain, and (c) left push-failed
commits stranded locally with nothing ever re-pushing them until unrelated
new work arrived.

Now: compute_paths_to_stage classifies every entry (stageable / retained
privacy-held / dropped skipped-invalid-unmatched-missing); rewrite_queue
re-reads the LIVE queue at mv time and removes only this drain's processed
paths (retained + concurrent appends + unparseable lines survive; atomic
tmp+mv); an unpushed-commit detector at run start re-pushes stranded local
commits (receipted fail-closed; a receipt refusal skips the retry rather
than wedging the drain; guards missing origin/<branch>; runs inside the
existing lock). Status lines carry counts; full drop paths go to a 0600
sidecar (.brain-sync-drops.json) so filenames stay out of transcripts.
--drop-queue remains the one intentional truncation.

Matrix added: privacy retention, unmatched/missing counted drops + sidecar
mode, unparseable-line preservation, surgical same-drain retention, push-fail
commit retention + detector re-delivery on an EMPTY queue, receipt-refusal
skip. 35/35 in test/brain-sync.test.ts.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(gbrain): make --full do a full code walk, not a delta one

`runCodeImport()` walked with a bare `gbrain sync --strategy code --source X`.
The strategy is right, but that walk is incremental: it only revisits files
changed since the source's checkpoint. A file missed at the ORIGINAL import is
therefore never revisited and stays out of the index indefinitely.

The reindex-code pass below cannot rescue it. It re-chunks pages that already
exist and never walks the filesystem — the same property the comment directly
above already relies on when explaining why the walk has to run first. That fix
landed one flag short: it made a fresh source get pages at all, but left
`--full` unable to discover a file the first walk skipped.

Net effect: `/sync-gbrain --full` did not perform a full walk, and re-running it
never re-detected the gap.

The failure is silent, which is what makes it expensive. Nothing errors, nothing
warns, and the verdict block still reports OK while `gbrain search` and
`gbrain code-def` answer out of a partial index. It reads as "gbrain is weak at
code questions" rather than "the index is incomplete".

Measured on two local code sources before and after this change, counting
exported functions resolvable via `gbrain code-def`: one went from 61/201 (30%)
to 180/201 (89%), importing 79 files that had no page at all; the other had
whole source files missing entirely and reached 93%. Both had been serving
search from a partial index for weeks.

Scoped to `--full` so incremental runs stay fast. `--yes` because this spawns
non-interactively and a full walk otherwise prompts to confirm import cost.

Anyone can check their own brain without applying this:

    gbrain sync --source <id> --strategy code --full --dry-run

and compare "N file(s) would be imported" against that source's page_count.
Worth knowing while doing so: the default strategy is markdown and --strategy
is per-invocation, never persisted on the source, so dropping the flag reports
strategy=markdown and a handful of files.

* fix(brain-cache): honest 'missing' instead of fabricated-empty digests on gbrain failure

A gbrain-unreachable failure in fetchRecentDecisions and fetchSalience
used to be converted into a cached 'successful' empty digest ("_No prior
skill runs recorded._" / "_No salient pages in last 14d._") that
refreshEntity stamped with last_refresh. The false negative then
survived every subsequent TTL cycle, indistinguishable from a genuine
zero-rows result. Now failure returns null, so cmdGet's existing
missing/stale-fallback machinery reports the true state — matching what
fetchGoals and fetchSimplePage already do on failure.

Also adds an Array.isArray guard in fetchRecentDecisions so a malformed
payload ({pages: {}} etc.) classifies as failure instead of crashing
refreshEntity mid-refresh; a genuinely empty pages array still renders
the honest empty digest.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): give the schema-mismatch rebuild test a load-proof budget

The rebuild path refreshes every per-project entity against the real gbrain
CLI; with an unreachable brain each spawn runs to its own timeout, and under
machine load the stack exceeds bun's 5s default (observed 5.2-5.4s,
identically on pre-#2587 binaries — a load flake, not a regression). 30s
budget matches the sibling brain-sync suite's convention.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(memory-ingest): parse the current Codex response_item rollout shape

Fixes #2105. Codex rollout JSONL moved to
{ type: 'response_item', payload: { type: 'message', role, content: [...] } };
the parser's legacy payload.message branch never fired on it, so every Codex
session imported as an empty shell (message_count: 0 — 243/243 sessions on
the reporting machine). Both shapes now parse; non-message response_items
(reasoning etc.) are ignored. parseTranscriptJsonl exported for direct unit
tests (CLI path unchanged — import.meta.main guard).

Note: #2104's staging-in-gitignored-tree half is already defended on main
(--include-gitignored + GIT_CEILING_DIRECTORIES, #2144, plus the #2486
reconcile guard) — verified, no change needed; it moves to the close-only
roster.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): refresh codex/factory ship goldens from post-#2588 regeneration

The #2588 absorb refreshed all three ship goldens, but `bun run
gen:skill-docs` regenerates the CLAUDE host only — the codex/factory goldens
were copied from artifacts rendered before the resolver change and failed
against a fresh external-host regen in the serial test phase. Re-rendered
with --host codex / --host factory and re-copied.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(make-pdf): boolean flags no longer swallow the next positional argument

Fixes #2514. The parser treated any non-flag token after a flag as its value,
so `$P generate --toc essay.md` ate essay.md as --toc's value and failed with
"missing input" — the skill's own documented usage only worked when two
boolean flags happened to be adjacent. BOOLEAN_FLAGS enumerates the no-value
flags; value flags (--watermark, --to, --title, ...) are unchanged. main()
now runs behind import.meta.main so tests import the parser directly.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(repo-mode): probe GNU stat before BSD so Git Bash stops crashing

Fixes #2195. On GNU coreutils `stat -f` SUCCEEDS (filesystem status, not a
format string), so the BSD-first fallback chain never fell over — it fed
multi-word filesystem output into the cache-age arithmetic and crashed under
set -u on Windows Git Bash. GNU `stat -c` fails cleanly on BSD/macOS, making
GNU-first deterministic on both; the mtime is numeric-validated before
arithmetic as a last line of defense.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(retro): point the prior-retros context query at files /retro actually writes

Fixes #2552's live half. The gbrain context-query glob targeted
~/.gstack/projects/<slug>/retros/*.md — a directory and extension nothing
writes — so prior-retro recall was dead on every brain-aware run. /retro
saves to .context/retros/*.json (repo-local); the query now reads that. The
issue's second defect (quoted-tilde orphan sweep) is already fixed on main —
the preamble sweeps with "$HOME/..." — verified, no change needed.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(sync-gbrain): remove the capability-check page file left in the user's repo

Fixes #2503. On worktree-pinned brains `gbrain put` materializes the checked
page as _capability_check_<pid>.md in the current directory (the user's
repo), and `gbrain delete` removes the page but not the file — every
/sync-gbrain run left a stray file in the repo root. The check now deletes
the materialized file explicitly after the page delete.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(browse): warn that hover scrolls and the daemon tab persists across sessions

Fixes #2445. Both behaviors are by design but produced confidently wrong
verification output: hovering a below-the-fold element scrolls the page
before a "rest state" screenshot (exit 0, wrong section), and the daemon's
tab survives sessions so a bare `reload` can act on whatever earlier work
left open. The screenshot-evidence section now names both traps with the
concrete guards (assert window.scrollY; always goto before verifying).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(gitattributes): pin *.txt to LF

.gitattributes pins LF for every other text format in the repo (*.md,
*.tmpl, *.yml, *.yaml, *.json, *.toml, *.sh, *.ts, extensionless scripts,
even the hash-pinned diagram-render dist files). *.txt is the one text
format left unpinned.

On Windows with core.autocrlf=true, that means the two tracked .txt files
are rewritten to CRLF at checkout and then read as permanently modified:

  gstack/llms.txt                                   +174 bytes
  make-pdf/test/fixtures/combined-gate.expected.txt  +20 bytes

git status is never clean, and /gstack-upgrade's 'git stash' step saves a
phantom stash on every upgrade — one that pops back to an empty diff.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* fix(setup): install every skill runtime asset for the Claude host

On a fresh Claude install, link_claude_skill_dirs installed only SKILL.md
(+ sections/) per skill. Every skill that reads a sibling runtime file at
.claude/skills/<name>/<file> was broken out of the box: /review stopped at
'Read .claude/skills/review/checklist.md' (file never installed), and qa's
templates/references, plan-devex-review's dx-hall-of-fame.md,
gstack-upgrade's migrations/, and careful/freeze's bin/ hooks were all
silently missing. Codex/Factory/OpenCode/Kiro installers already copied
these; the primary host never did.

Fix: a shared _link_skill_runtime_assets helper installs EVERYTHING a skill
ships next to its SKILL.md, with an explicit exclusion list (F7):
node_modules, dist, test, *.tmpl, hidden files. Exclusion-list polarity
means a newly added asset installs by default instead of being silently
dropped. Assets refresh unconditionally on re-run (rm + relink/copy), so
Windows real-dir copies pick up changes after git pull.

New free test runs the real installer functions against the live repo into
a temp skills dir with a TWO-CLASS referenced-paths assertion (ENG-OV7):
alias-relative refs (.claude/skills/<name>/<path>) must exist under the
install; repo-anchored refs (~/.claude/skills/gstack/<path>) must exist in
the tree modulo an explicit built-artifact allowlist (browse/design/
make-pdf dist + the compiled gstack-global-discover). Known-broken class-2
refs (#2250 bare bin names) are ratcheted: the test fails if they quietly
start existing without the entry being removed.

Fixes #2317
Fixes #2454

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(setup): alias skills install as rewritten copies, never symlinks

The two back-compat alias dirs — _gstack-command (root router) and
connect-chrome (→ open-gstack-browser) — symlinked the canonical SKILL.md
verbatim, so each alias re-served the canonical frontmatter name:. Claude
Code keys skills on that name and requires global uniqueness: the
connect-chrome duplicate silently shadowed /open-gstack-browser (whichever
readdir returned first won), and the _gstack-command duplicate could drop
the ENTIRE personal-skills set — every /gstack command vanished until the
user hand-deleted the alias dirs, and the next setup re-broke it.

Fix: copy-then-rewrite. A shared _install_alias_skill_md helper reads the
SOURCE SKILL.md and writes a fresh copy with name: rewritten to the alias
dir's own name (_gstack-command / connect-chrome / gstack-connect-chrome).
sed never edits in place: on Unix the old install was a symlink into the
repo, and an in-place rewrite through it would have corrupted the generated
source (eng review E2). bin/gstack-relink gets the same treatment for its
root-alias helper, and its discovery loop now skips symlinked source dirs
so the connect-chrome repo symlink can't re-mint the duplicate.

Tests assert: installed aliases are NOT symlinks, carry their own unique
names, all installed frontmatter names are globally unique, re-runs refresh
cleanly, legacy symlinked aliases are replaced not written through, and the
source files stay byte-intact.

Fixes #2511
Fixes #2201

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(setup): Windows re-runs refresh installed skills for codex/factory/opencode hosts

On Windows (Git Bash / MSYS2, no Developer Mode), _link_or_copy installs
REAL directory copies. The install guards in link_codex_skill_dirs,
link_factory_skill_dirs, link_opencode_skill_dirs, and create_agents_sidecar
only ran the copy when the target was a symlink or missing — true on the
first install, never again. Every subsequent ./setup after a git pull
reported 'gstack ready (codex).' and exited 0 while silently refreshing
nothing: users ran stale SKILL.md forever. (link_claude_skill_dirs already
handled this; the other hosts never got the treatment.)

Fix: all five guard sites bypass the symlink-or-missing check when
IS_WINDOWS=1 — _link_or_copy rm -rf's the destination first, so the real-dir
copy refreshes in place. Unix behavior is unchanged (symlinks still pass the
guard via -L and serve updates without re-copying).

The new bash-fixture test drives the REAL extracted functions through the
install → upstream change → re-run cycle under IS_WINDOWS=1 (v1 must become
v2), pins the sidecar-skip behavior, checks the Unix path stayed a symlink,
and statically asserts the bypass at all five sites so factory/opencode
can't regress. Registered in the Windows-safe curated list
(KNOWN_WINDOWS_SAFE) so it actually runs on the windows-latest CI lane —
the 'bin/' pattern hit is a fixture path segment, not a shebang spawn.

Fixes #2444

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(uninstall): remove real-directory skill installs, gated on provenance

On Windows, setup installs skills as REAL directory copies (cp -R via
_link_or_copy). gstack-uninstall's per-skill loop filtered on [ -L ], so
every copy was skipped: --force exited 0 and printed 'gstack uninstalled.'
while leaving ~52 gstack-* directories plus _gstack-command/ behind in
~/.claude/skills. The same filter also missed the standard Unix shape (real
dir + symlinked SKILL.md), which was left as a dangling-symlink husk.

Fix: the loop now handles all three install shapes. Symlink entries keep
the existing readlink check. Real dirs with a SYMLINKED SKILL.md are removed
when the link points into gstack (same semantics as setup's cleanup
helpers). Real dirs with a REAL-FILE SKILL.md — the Windows copy shape — are
removed ONLY when both provenance gates pass (F8): (a) the directory name is
in gstack's skill inventory (source dir names, frontmatter names, gstack-
prefixed variants, and the alias dirs), and (b) the SKILL.md carries the
existing generated banner '<!-- AUTO-GENERATED from' (ENG-OV10: every
pre-v1.67 copy already carries it; a NEW marker would refuse to delete
legitimate old installs, recreating the bug). Anything failing a gate is
listed to stderr and never deleted — a user's own skill that happens to
share a name with a gstack skill survives.

Tests: a fake-tree fixture covers removed/kept/listed for every shape
(including the F8 name-collision row), and a census test asserts every
installable skill's generated SKILL.md carries the banner so the gate can't
strand a bannerless skill. Registered in the Windows-safe curated list —
the copy shape is exactly what windows-latest exercises.

Fixes #2563

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(setup): wire --host cursor through the full install path

'./setup --host cursor' was accepted by the flag parser and then did
nothing: no INSTALL_CURSOR branch existed, so the script built binaries,
printed no 'ready' line, and installed zero skills — Cursor users had no
way to install gstack at all.

Full install slice, re-derived from PR #2547 by @szsunyuan onto the
current installers: generate .cursor/ skill docs (host config already
existed), create a minimal ~/.cursor/skills/gstack runtime root (root
SKILL.md + bin/lib/browse assets + review checklist pair + ETHOS.md +
supabase config — bin and lib travel together because bin scripts import
../lib), link the generated gstack-* skills, and plant the repo-local
.cursor/skills/gstack sidecar WITHOUT ever wiping the generated SKILL.md
files it shares a directory with (link-before-sidecar ordering keeps the
generation fallback alive). Auto mode detects Cursor via the cursor
binary or the ~/.cursor footprint. gstack-uninstall removes
~/.cursor/skills/gstack* and per-project .cursor/skills/gstack* — and
never rmdir's .cursor itself, where Cursor stores user rules.

Re-derivation deltas from the PR: the link guards carry the #2444
IS_WINDOWS bypass (re-runs refresh real-dir copies), lib/ and
supabase/config.sh ride along like every other runtime root, and the
hosts/cursor.ts sidecar field is omitted (HostConfig no longer carries
one — sidecar behavior lives in setup).

Fixes #1358

Co-authored-by: Yuan Sun <forrest.sun527@gmail.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(settings): include command in add-event dedup key (#2382)

Fixes #2382.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(setup): render the gbrain :user variant to an out-dir — global installs stay git-clean

On a global-git install with gbrain, ./setup and 'gstack-config
gbrain-refresh' ran gen:skill-docs:user IN PLACE inside the install
checkout, rewriting ~16 TRACKED SKILL.md files. The checkout stayed
permanently dirty, every /gstack-upgrade 'git stash' saved a redundant
snapshot of generated content, and the growing stash list invited a 'git
stash pop' that would lay stale instruction markdown from an older gstack
over the current version — a quiet wrong-rules failure mode.

Fix, wired through machinery that already existed (gen-skill-docs
--out-dir + the symlink install layer): brain-aware SKILL.md now renders
into the untracked ~/.gstack/render/claude, and both Claude installers
serve the render when present — setup's link_claude_skill_dirs prefers
$GSTACK_HOME/render/claude/<skill>/SKILL.md, and bin/gstack-relink does
the same so a later config change can't silently flip skills back to the
blockless canonical source. setup wipes and rebuilds the render each run,
repoints installed skills after a successful render, and removes a stale
render (re-linking canonical) when gbrain is gone. gbrain-refresh renders
to the out-dir and repoints via relink; its 'this dirties the install's
git tree' caveat is retired because it no longer does.

A one-time upgrade migration (gstack-upgrade/migrations/v1.67.0.0.sh, F12)
restores the legacy dirt: unstaged modifications to SKILL.md / sections/
*.md files in the install checkout are git-checkout'd back to canonical;
anything outside that footprint (user edits, untracked files, staged work)
is left alone and reported. Idempotent, non-fatal, symlinked installs
skipped.

Tests: render-preference behavior for both installers, static pins that
every executable :user invocation carries --out-dir and the caveat text is
gone, migration fixture (restore/leave/idempotent/no-op matrix), and the
existing out-dir render test now asserts 'git status --porcelain' gains
zero new entries across a full :user render.

Fixes #2569

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(redact): close the remaining #1946 fail-opens — detection coverage + one-time consent

Two of #1946's reported gaps were still open after the v1.64 fail-closed
work (the git-error and oversized-diff paths in bin/gstack-redact-prepush
are already strict, chunked, and pinned by tests):

1. Detection fail-open: env.kv required an UPPERCASE name with an '='
   assignment, so 'api_key=…', 'apiKey: "…"', and 'password: …' — the
   most common real config shapes — produced NO finding at all. The pattern
   is now case-insensitive, accepts ':' (YAML/JSON) as well as '='
   assignment, and handles quoted JSON keys. It stays MEDIUM and
   entropy-gated per the calibration rule (a generic net that cries wolf
   gets bypassed), with pinned cases for each closed shape plus the
   placeholder/entropy negatives.

2. Install fail-open: nothing ever offered the guard, so a plain 'git
   push' scanned nothing and users believing themselves protected weren't.
   setup now asks ONCE for consent on a real interactive terminal
   (maintainer decision 6): an explicit answer is recorded to the existing
   redact_prepush_hook key and never re-asked; a timeout or non-interactive
   run changes nothing and keeps the hint-only posture. Default stays
   FALSE, and setup still never installs the hook itself — /ship owns the
   per-repo install (the wrong-repo invariant is pinned by the existing
   'setup carries the hint only' test).

Tests: per-shape pattern cases, prompt gating statics (key-absence + TTY +
timed default-N read), timeout-persists-nothing, non-interactive stays
hint-only with no key write, and recorded-answer-is-silent behavior runs.

Contributes to #1946 (the pre-push guard's fail-closed scan paths landed
in earlier releases; this closes the coverage and consent gaps it names).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(hooks): Stop hook closes dangling timeline entries — fail-open

The preamble writes event:'started' to the project timeline at every skill
start, but the matching 'completed' write lives in prose at the END of the
skill workflow — unenforceable. An interrupted session, a context blowout,
or an agent that simply stops leaked started > completed forever, and the
leak was unrepairable after the fact (observed live in #2553).

New hosts/claude/hooks/timeline-stop-hook (+ .ts, question-log-hook shim
pattern): on Claude Code's Stop event it appends event:'completed' with
outcome 'unknown' and source 'stop-hook' for every 'started' entry in the
project timeline that has no matching completion. setup registers it via
gstack-settings-hook add-event (Stop was already an accepted event) under
its own source tag, idempotently; --no-team and gstack-uninstall remove it.

FAIL-OPEN contract (F5), pinned by tests: ALWAYS exits 0 — corrupt
timeline (bad lines skipped individually, valid ones still repaired),
missing timeline, garbage/empty stdin, bun missing from PATH (the shim
'|| true's), and an over-cap timeline (10MB skip) all repair nothing and
block nothing; errors land in ~/.gstack/hook-errors.log best-effort. The
write path is append-only with a ~2s internal budget, and a second Stop is
a no-op (already-closed entries never re-close). Correlation is
project-scoped by design — the preamble's session id is shell-local, so a
concurrent same-project session's entry may close early as a traceable
source:'stop-hook' row rather than a silent leak; the header documents the
trade-off.

Fixes #2553

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* ios-qa: guard DebugBridgeTouch.m on DEBUG, not just TARGET_OS_IOS

DebugBridgeTouch.m and its header both promise the code is DEBUG-only and
never shipped:

    "Uses these private UIKit selectors (DEBUG-only; never shipped to App Store)"
    "DEBUG-only — never link in Release."

Nothing enforced it. The only guard was `#if TARGET_OS_IOS`, so a Release build
for iOS compiled the entire implementation in, private API and all.

Measured on a real app (an iOS Release build, `nm -j` on the app binary):

    DebugBridge symbols            15
    IOHIDEventCreateDigitizer       2
    AXSSetAutomationEnabled         1 symbol, 2 strings
    IOKit.framework                 4 strings

including +[DebugBridgeTouch sendTapAtPoint:inWindow:] and
_OBJC_CLASS_$_DebugBridgeTouch. That is a Guideline 2.5.1 private-API exposure
in a shippable binary, and it fails Package.swift's own stated CI invariant:

    nm -j build/Release/<binary> | grep -q DebugBridge && exit 1

WHY THE EXISTING GUARD DOES NOT COVER THIS

Package.swift documents the protection as `.when(configuration: .debug)` on the
consuming target's dependency. That works for SwiftPM consumers. It cannot be
expressed by an app that integrates DebugBridge as a local package inside an
.xcodeproj: Xcode's Filters column under Frameworks, Libraries, and Embedded
Content offers platform conditions only — iOS, macOS, visionOS — never build
configuration. So for xcodeproj consumers the documented guard silently does
nothing, which is precisely the case that was measured.

The Swift targets were already safe: all four .swift files are `#if DEBUG`
guarded and Package.swift defines DEBUG for them via swiftSettings. Only the
Objective-C target, the one that actually links private API, was unguarded.

THE FIX

1. DebugBridgeTouch.m.template now branches `#if !defined(DEBUG)` first and
   emits nothing at all in Release, falling through to the existing iOS and
   non-iOS branches only in Debug.

2. Package.swift.template declares DEBUG explicitly for the ObjC target:

       cSettings: [.define("DEBUG", .when(configuration: .debug))]

   The two Swift targets already did this. Relying on SwiftPM's implicit DEBUG
   for C-family targets is not worth betting a private-API exposure on.

VERIFIED, by compiling the generated file for iOS both ways:

    xcrun -sdk iphoneos clang -c DebugBridgeTouch.m -arch arm64 ...

    Release (no -DDEBUG)   0 DebugBridge symbols, 0 private-API symbols,   448 B
    Debug   (-DDEBUG=1)    7 DebugBridge symbols, 6 private-API symbols, 13104 B

The harness is unchanged in Debug. Release now emits an empty translation unit.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* fix(ios-qa): bridges search front-most presented content first

A presented sheet sits AFTER the screen it covers in window.subviews, so
the elements walk emitted the covered screen first — a client taking the
first match for a label activated a control the user cannot reach, and
the agent saw a success (measured on a real app: the sheet's 'Create'
button ranked 210th behind 35+ covered-screen entries). Menus, alerts and
action sheets were worse: each gets its OWN UIWindow, so keying off
isKeyWindow missed them entirely — absent from /elements, dropped from
/screenshot, untappable via /tap.

Re-derived from PR #2397 by @IDSTUK onto the current bridge templates
(the SwiftUI tap-reliability rework had moved underneath the PR):
ScreenshotBridgeImpl gains orderedWindows(in:) (visible windows front-most
first by windowLevel then insertion order, PassThroughWindow overlays
still filtered), frontmostWindow(), and searchRoots() (per window, the
top-most presented view controller's view before the window itself).
/elements walks those roots in order through the existing shared
visited-set + budget, so overlapping roots emit each view once at its
front-most position; /tap targets frontmostWindow() for both the
accessibility-activation and synthesized-touch paths; /type and /swipe
search the roots in order; /screenshot composites every window
back-to-front at the existing 1x scale. The two now-dead private
activeScene/activeKeyWindow copies in ElementsBridgeImpl and
MutationBridgeImpl are removed.

Fixture mirror synced byte-for-byte; verified with a full
'xcodebuild build -scheme FixtureApp-Package -destination
generic/platform=iOS Simulator' (BUILD SUCCEEDED, DEBUG guard from the
previous commit included).

Co-authored-by: IDST UK <IDSTUK@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(setup-gbrain): invoke gstack-memory-ingest/gstack-gbrain-sync via bun run + .ts

/setup-gbrain's transcript-ingest steps told the agent to run
bin/gstack-memory-ingest and bin/gstack-gbrain-sync by BARE name. Neither
exists — only the .ts files ship (mode 644, no bin alias) — so the agent
dutifully reported 'script missing at install root' and the ingest/full-
sync steps dead-ended on every host (hit live under Codex; the Claude
render carries the same text).

All four template sites (probe, silent-bulk, post-answer full sync, the
preamble-hook incremental mention) and the four memory.md reference-doc
sites now use the repo's established form: 'bun run <path>/gstack-memory-
ingest.ts …' / 'bun run <path>/gstack-gbrain-sync.ts …' — matching what
sync-gbrain already does. Generated SKILL.md regenerated from the template
in the same commit.

Re-derived from PR #2409 by @SomSamantray per the wave's screening rule
(the PR edited the generated SKILL.md directly; the generated file must
come from gen:skill-docs). The contributor's structural test rides along
as-is: bare-invocation regexes with negative .ts lookahead and backslash-
continuation coverage pin every site, so the drift can't return. The
referenced-paths ratchet in test/setup-claude-skill-assets.test.ts drops
its two #2250 known-broken entries — the class-2 assertion now guards
these paths again.

Verified against #2250's site list (template lines 690/735/784-area, all
covered) plus a fresh grep: zero bare invocations remain in the template
or memory.md; the one prose mention ('gstack-memory-ingest now persists…')
is not an invocation and stays.

Fixes #2250
Fixes #2393

Co-authored-by: SomSamantray <SomSamantray@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): update four main-side assertions to the T3 installer contracts

Integration drift from the T3 lane: three static assertions pinned the OLD
implementation shapes that T3 legitimately replaced — the gbrain-refresh
branch no longer self-documents a reset --hard cycle (#2569 renders to an
untracked out-dir instead; the test now pins THAT), setup's regen block
renamed to the render form (re-anchored, same exit-code-propagation
invariant), and sections/ linking generalized into _link_skill_runtime_assets
(the _link_or_copy routing assertion moved into the helper). Fourth: the
uninstall neutral-target test asserted against os.tmpdir(), which reads
$TMPDIR at call time — a shard neighbor can leave it gstack-containing,
making the "neutral" symlink target match the provenance substring; the test
now falls back to a fixed neutral root and asserts neutrality explicitly.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: whitelist engine-locked at all three gbrain-usable gates (#2456)

#2194 taught the classifier to report a PGLite lock held by a live
\`gbrain serve\` as engine-locked instead of broken-config, but none of the
three "is gbrain usable?" gates accepted the new status — so the symptom
moved from a wrong error to a quieter wrong suppression: gbrain-refresh
stripped GBRAIN_CONTEXT_LOAD / GBRAIN_SAVE_RESULTS blocks out of every
generated SKILL.md after every upgrade, on the RECOMMENDED /setup-gbrain
default (PGLite + local-stdio MCP spawns gbrain serve at session start).

engine-locked is the same class as timeout (#1964): the engine is
installed and healthy, a legitimate holder has the lock. All three gates
now agree:

- bin/gstack-gbrain-detect --is-ok exits 0 on engine-locked
- bin/gstack-config gbrain-refresh case arm renders instead of suppressing
- scripts/gen-skill-docs.ts --respect-detection treats it as detected

Test mirrors the existing timeout case in
test/gbrain-detection-override.test.ts (engine-locked renders brain
blocks; the sibling no-cli case still proves suppression works).

Applies the reporter's patch + test from the issue.

Fixes #2456

Co-authored-by: Mateus Moraes <mmoraes@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: detect bearer-token thin clients via host MCP registration (#2520)

The #2051 thin-client fix keys detection on the remote_mcp marker in
~/.gbrain/config.json — but that marker is only written by the OAuth path
(gbrain init --mcp-only). Bearer-token installs (gbrain connect <url>
--token, gbrain's own recommended default for local/personal use) never
touch config.json, so they fell through to the local probe, failed against
the dead-or-absent local engine, and landed on missing-config / broken-db /
broken-config / engine-locked — silently suppressing brain blocks for a
fully-working remote brain.

New evidence source: hasRemoteOnlyGbrainMcp() reads ~/.claude.json MCP
registrations (user scope AND project scope) with the same classification
rules as gstack-gbrain-detect's tier-3 fallback. File-read only — no
subprocess, no network (a classifier network probe is the #1964 pathology).
Wired at two sites in freshClassify:

- missing-config branch: a bearer thin client may never have run a local
  init; if the host's only gbrain registration is remote-HTTP, that
  registration IS the brain → thin-client.
- post-probe-failure demotion: broken-db / broken-config / engine-locked
  reclassify to thin-client when the only gbrain registration is remote.
  A local-stdio sibling registration blocks the demotion (federation
  guard: a user running a local engine plus a remote team brain keeps
  precise local statuses). "timeout" is excluded — already usable, and
  may be a genuinely healthy slow local engine.

7 new unit tests in test/gbrain-local-status.test.ts: user-scope, project-
scope, engine-locked/broken-db demotion, federation guard, no-registration
discriminator, end-to-end --is-ok gate (35 pass total in the file).

Root-cause analysis by @d-danielsun in #2520.

Fixes #2520

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: resolve GBRAIN_HOME with gbrain's parent-dir semantics (#2521)

gstack treated GBRAIN_HOME as the config directory; gbrain's configDir()
treats it as the PARENT and always appends `.gbrain` itself (the contract
is explicit in gbrain's source: GBRAIN_HOME=/tmp/x → /tmp/x/.gbrain/
config.json). With GBRAIN_HOME set, gstack classified engine status from
a file gbrain never reads — the probe's two halves (file checks vs the
spawned `gbrain sources list`) looked at DIFFERENT installs, so any
resulting status was arbitrary: missing-config/broken-config against
healthy installs, or a thin-client marker gstack saw that gbrain itself
reported as "No brain configured".

New shared resolver `gbrainConfigDir()` in lib/gbrain-exec.ts is the
single source of truth. All seven gstack sites route through the contract:

- lib/gbrain-local-status.ts gbrainConfigPath (the classifier's file half)
- bin/gstack-gbrain-detect GBRAIN_CONFIG + readRemoteMcpUrl
- lib/gbrain-exec.ts buildGbrainEnv (the probe's DATABASE_URL seed —
  fixing only the classifier would have left the split-brain in the
  spawn half, flagged by the reporter)
- lib/gbrain-guards.ts gbrainHome (clones-dir + autopilot-lock paths)
- lib/gstack-memory-helpers.ts gbrainConfigPath (engine-tier fallback)
- bin/gstack-gbrain-install pre-doctor config check (shell)

Unit tests cover GBRAIN_HOME set (config found at $GBRAIN_HOME/.gbrain),
the old flat layout explicitly NOT read (both classifier and
buildGbrainEnv), and unset (~/.gbrain unchanged). Existing fixtures that
encoded the deviant flat layout are updated to gbrain's contract.

Root-cause analysis by @d-danielsun in #2521.

Deviation from the 3-site plan spec: the same deviant resolution existed
in four more sites (buildGbrainEnv, gbrain-guards, memory-helpers,
gbrain-install); fixing only three would have left gstack disagreeing
with itself as well as with gbrain, so the whole class moved to the
shared resolver in one change.

Fixes #2521

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: read project-scoped MCP registrations in gbrain detection (#2499)

Claude Code registers MCP servers at two scopes in ~/.claude.json: user
scope (.mcpServers) and project scope (.projects["/abs/path"].mcpServers
— what `claude mcp add` WITHOUT --scope user writes). Every gbrain
detection site read only user scope, so a correctly configured
project-scoped brain was invisible: brain-aware blocks suppressed,
remote-mode artifacts sync never recognised, and detectEndpointHash fell
through to the 'local' literal — two different project-scoped brains
hashed identically, so switching between them never invalidated the
cache, the exact scenario the function's docstring says it exists to
catch. Nothing errored; the features just quietly were not there.

Two sites fixed:

- scripts/resolvers/preamble/generate-brain-sync-block.ts: the shared
  detection block (rendered into every tier-2+ SKILL.md) now resolves the
  gbrain entry ONCE into _GBRAIN_MCP_ENTRY — user scope first, then the
  nearest-ancestor project entry for $PWD that actually carries a gbrain
  server (longest matching key with a path-boundary check: /a/repo never
  matches /a/repo2; a nested project WITHOUT gbrain doesn't shadow its
  parent's registration). _GBRAIN_MCP_TYPE and _GBRAIN_HOST extract from
  the resolved entry, so claude.json is parsed once per skill start. All
  SKILL.md files regenerated in this commit; the ship golden fixtures and
  three carve-guard skeleton caps (plan-eng-review, plan-devex-review,
  office-hours; ~1.5KB rendered growth per skill) are refreshed with
  measured values.
- bin/gstack-brain-cache detectEndpointHash: same resolution order in TS
  (user scope, else nearest-ancestor project entry by cwd, both path
  separators for Windows keys).

Tests: rendered-output tests in test/gen-skill-docs.test.ts pin the
regenerated block (static markers + a FUNCTIONAL run of the exact
rendered lines against a fixture ~/.claude.json with only a
project-scoped registration, plus an outside-cwd discriminator);
detectEndpointHash unit tests in test/brain-cache-roundtrip.test.ts cover
project-scope resolve, path-boundary, nearest-ancestor distinct hashes,
and user-scope precedence.

Root-cause analysis by @samporter-31 in #2499.

Fixes #2499

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: /sync-gbrain respects an existing valid .gbrain-source pin (#2417)

/sync-gbrain always derived a new worktree-scoped source ID, even when
the repository already carried a valid .gbrain-source pin created through
the native GBrain source workflow — silently bypassing the selected
source boundary, registering a duplicate federated source, and routing
later dream/cycle checks to the wrong source.

Now a local pin is reused when it passes the fail-closed identity checks:
the ID is syntactically valid, the source is registered, and the
registered path realpath-resolves to the current checkout (so a stale or
copied dotfile can't redirect a sync into another repo's source). A
confirmed pin is treated as user-managed — synced and attached without
add/remove, legacy migration, or federation changes. Dry-run stays
spawn-free (reads only the local marker for previews). Missing, invalid,
stale, or unreadable pins fall back to the existing generated source ID.

Absorbs PR #2417 by @exGeni (applied via git am -3; 42 tests pass in
test/gstack-gbrain-sync.test.ts including the new pin-respecting
coverage: spawn-free dry-run, symlink-equivalent registered paths,
non-dry-run sync/attach with no add/remove, dream routing, unreadable
markers, config-backed env use).

Co-authored-by: Evgenii Lopatin <e75533@gmail.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: gstack-gbrain-install --dry-run no longer requires the network (#2540)

The GitHub reachability probe (curl --head, 10s max) was gated only on
--validate-only, so a --dry-run — which prints a plan and exits without
ever cloning — could fail with exit 3 "cannot reach https://github.com"
whenever the curl lost a race for sockets/DNS. Reproducible at ~15% by
running 60 dry-runs concurrently, and the cause of intermittent red in
the D5 detect-first tests, which call this exact path.

The probe now also skips under --dry-run: requiring the network for a
plan-print buys nothing and costs a real failure mode. Real installs
still fail fast when offline rather than hanging git clone.

Absorbs PR #2540 by @CarringtonCreative (applied via git am -3;
26 tests pass across test/gbrain-detect-install.test.ts +
test/egress-receipt-wiring.test.ts).

Fixes the offline/flake half of #2536.

Co-authored-by: Carrington Dennis <carrdenn3@gmail.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat: accept 3-digit semver + package.json version sources (#2501)

Two version-source shapes failed CLOSED in a way that silently disabled
/ship's queue-collision check:

1. A --version-path / .gstack/version-path target that is a package.json
   was read as raw text: the whitespace strip turned the JSON into
   '{"name":"frontend",... which parseVersion rejected, so every read —
   local, `git show`, and rival PRs' claims through the GitHub/GitLab
   Contents APIs — fell back to 0.0.0.0 and competing claims were dropped
   as "malformed".
2. parseVersion required exactly four components, so gstack-next-version
   exited 2 on EVERY invocation in a 3-digit repo. That CLI IS the
   queue-collision check; /ship then took its documented offline path of
   naive local arithmetic, two branches cut from the same base picked the
   same version, and git merged the duplicate without a conflict.

New lib/version-source.ts holds the shared semantics so both CLIs agree
by construction: parseVersion accepts 3- or 4-digit (3 pads the micro
slot for uniform comparison), versionWidth/fmtVersion keep a 3-digit repo
3-digit through bumping and formatting, micro coerces to patch on 3-digit
repos (with a warning in the output), and extractVersion reads a .json
version-path as JSON (.version) from any byte source. gstack-version-bump
treats a package.json version-path as that repo's single source of truth
(written in place, DRIFT_* states can't arise — no second file to drift
from). Detection is by shape, not new configuration.

Scope per the wave plan's version-tooling end-state spec (decision 11,
ENG-OV1): this is the READING capability + 3-digit acceptance ONLY.
gstack's own VERSION file stays the 4-digit source of truth; nothing here
flips authority to package.json. The PR's bundled fix for the
.gstack/version-path pin being ignored by classify's base read lands
separately (#2462) — these tests drive the JSON version-path through the
explicit --version-path flag.

Re-derived from PR #2501 by @YiftahR (73 tests pass across
test/gstack-version-bump.test.ts, test/gstack-next-version.test.ts,
test/ship-version-sync.test.ts).

Fixes #2501

Co-authored-by: YR <work.yiftah.rottem@gmail.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: write/repair sync npm lockfiles' version fields (#2567)

npm records the package version twice in its lockfiles — top-level
`version` and, in lockfileVersion >= 2, `packages[""].version` (the entry
describing the root package itself) — and `npm install` keeps both in
step. gstack-version-bump write/repair updated VERSION + package.json but
left the lockfile behind, so every /ship bump in an npm repo drifted one
field per release until someone ran npm, dirtying the tree on the next
`npm install` far from the cause.

write and repair now mirror the version into package-lock.json AND
npm-shrinkwrap.json (which shares the format and, when present, is what
npm actually honors) as a pure JSON edit — no npm spawn, no
dependency-tree churn, dependency entries untouched. Per the wave plan's
version-tooling end-state spec (decision 11): synced ONLY when the file
already exists, never created (gstack itself is bun-only). A failed
manifest/lockfile write keeps the existing exit-3 half-write semantics so
classify reports DRIFT_STALE_PKG on re-run instead of hiding the drift.

Tests: 5 new cases in test/gstack-version-bump.test.ts — both lockfile
version fields synced with deps untouched, repair heals a stale lockfile,
lockfileVersion 1 (no packages map) doesn't crash, npm-shrinkwrap.json
synced without inventing a package-lock.json, malformed lockfile exits 3
loudly (26 pass total in the file).

Re-derived from PR #2568 by @ortonom under decision 11.

Fixes #2567

Co-authored-by: ortonom <3261546+ortonom@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat: subdirectory manifests + npm-valid version mirror (#2531)

Two gaps in gstack-version-bump's manifest handling, resolved to the wave
plan's version-tooling end-state spec (decision 11):

1. Subdirectory manifests. A repo whose only Node package lives in web/,
   app/, or frontend/ has no ROOT package.json, so join(cwd,
   "package.json") reported pkgExists:false and every bump silently wrote
   VERSION alone — leaving the manifest to be bumped by hand, which is
   exactly the drift this tool exists to prevent, in the one layout where
   it silently did nothing. All three subcommands now resolve the
   manifest as --package-json-path → .gstack/package-json-path →
   ./package.json (mirroring resolveVersionPath).

2. npm-valid mirror. VERSION is 4-digit MAJOR.MINOR.PATCH.MICRO; npm's
   semver is 3-component and rejects a fourth, so mirroring the raw form
   breaks `npm ci` in any repo npm actually manages. The manifest and its
   lockfiles now carry the npm-valid 3-digit translation (1.67.0.0 →
   1.67.0) via npmVersion() in lib/version-source.ts. VERSION stays the
   4-digit source of truth. classify judges drift against the TRANSLATED
   form — a correctly-synced `0.1.25` no longer reads as eternal drift
   against `0.1.25.0` — and grandfathers the pre-v1.67 1:1 four-digit
   mirror as in-sync (flagging it DRIFT_UNEXPECTED would hard-stop /ship
   on every existing repo on upgrade day; the next write migrates the
   manifest to the translated form). Lockfiles are synced beside the
   resolved manifest — including beside a pinned JSON version-path — and
   only when they already exist.

classify output gains pkgPath and expectedPkgVersion for observability;
write/repair report packageJsonPath + packageJsonVersion. The /ship Step
12 prose (ship/SKILL.md.tmpl) documents the resolution chain and the
translation; SKILL.md files regenerated and ship golden fixtures
refreshed in this commit.

Tests: subdirectory pin + --package-json-path override, translated-form
classify (FRESH/ALREADY_BUMPED, no false drift), grandfathered 1:1
mirror, genuine divergence still drifts, repair to the npm-valid form
(33 pass in test/gstack-version-bump.test.ts; 526 pass across the five
affected files including goldens and parity).

Re-derived from PR #2531 by @CarringtonCreative on top of the 3-digit/
JSON version-source work, under decision 11 (which resolves the PR's
lockfile-gated translation in favor of an unconditional npm-valid
mirror).

Co-authored-by: Carrington Dennis <carrdenn3@gmail.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat: git-based version allocator when the PR queue is unreachable (#2545)

When the host query (gh/glab) failed, gstack-next-version returned
offline:true with an EMPTY claim set, and /ship's documented fallback was
local BUMP_LEVEL arithmetic. Local arithmetic cannot see a sibling's
claim, so the fallback allocated a version another open PR already held —
observed in a downstream repo where two merged PRs both read v0.1.57.0
(and an audit found four such duplicate pairs over three weeks).

New fetchGitClaimed() degrades the QUEUE VIEW without degrading the
ALLOCATION: git already knows what the API was asked for. It reads every
remote-tracking branch's pinned version file (through extractVersion, so
JSON version-paths resolve on remote refs too and each branch's own digit
width is preserved) plus the versions already shipped in the base's last
400 commit subjects (3- or 4-digit; the cap announces itself in warnings
when it truncates). The fallback runs only when the host told us nothing
— the online path is untouched — and the output gains a load-bearing
`fallback: "git" | null` field that /ship can branch on, plus explicit
warnings for both the recovered-from-git and the nothing-found cases.

Tests: end-to-end stub-gh offline contract (fallback:'git' + a valid
version + the warning), sibling-claim discovery from remote-tracking
refs, the pick advancing past the sibling's claim, shipped-subject
scanning, JSON version-path claims on remote refs, and non-repo
degradation to a warning (45 pass in test/gstack-next-version.test.ts).

Re-derived from PR #2545 by @CarringtonCreative under the wave plan's
version-tooling end-state spec; the PR's own VERSION/CHANGELOG stamping
is stripped (release stamping happens at /ship time, not per commit).

Co-authored-by: Carrington Dennis <carrdenn3@gmail.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: version-bump honors the .gstack/version-path pin in versionRel (#2462)

cmdClassify's current-version read already resolved the
.gstack/version-path pin, but versionRel — the repo-relative path fed to
`git show origin/<base>:<path>` — was derived from the CLI flag alone
(`argVal(args, "--version-path") ?? "VERSION"`). In a pinned repo with no
explicit flag, base and current therefore read DIFFERENT files: current
from the pinned file, base from the root VERSION. On a repo with no root
VERSION, the base always read 0.0.0.0 — and the pinned-JSON handling
never engaged, so a pinned package.json was read as raw text
(currentVersion 0.0.0.0) and `write` would have overwritten the manifest
with a bare version string.

New resolveVersionRel() resolves the pin's REPO-RELATIVE form once
(flag → .gstack/version-path first line → "VERSION"); classify, write,
and repair all derive both the relative and absolute paths from it, so
base and current reads can no longer diverge. The old resolveVersionPath
(which returned an absolute path `git show` cannot use) is folded in.

Unit tests (the ENG-OV6 spec case plus write/repair coverage): pin set +
no flag → classify reads base AND current from the SAME pinned file
(plain-text sub/VERSION and pinned frontend/package.json, both against a
real git base with NO root VERSION anywhere), write updates the pinned
manifest in place without inventing a root VERSION, repair treats the
pinned JSON as single-source, and the explicit flag still overrides the
pin (38 pass in test/gstack-version-bump.test.ts).

Re-spec'd per ENG-OV6 from the report in #2462 (the originally-filed
classify-read hypothesis was already handled; the live bug was the :138
versionRel derivation). Same fix shape independently identified in
PR #2501 by @YiftahR.

Fixes #2462

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: diff-scope glob coverage, honest exit contract, dirty-tree visibility (#2526, #2455, #2299)

Three silent-skip classes in bin/gstack-diff-scope, each of which quietly
disabled scope-gated reviewers in /ship and /review:

1. Pattern gaps (#2526, #2455). `*/api/*` required a path segment BEFORE
   api/, so a root-level api/ layout (Vercel serverless, Next.js pages/api
   at root) never set SCOPE_API — 63 serverless functions in the
   reporter's payments repo, none ever classified, the API-contract
   specialist silently skipped on every payment PR (it found a CRITICAL
   when run by hand). Same for root-level migrations/. And the Rails
   data_migrate gem's db/data/ data migrations — arbitrary Ruby run
   unattended against production data — fell through to plain BACKEND, so
   the [NEVER_GATE] data-migration specialist never got the chance to
   run. Added: api/*, migrations/*, db/data/*, data_migrations/*.

2. All-false was indistinguishable from "could not look" (#2526). New
   contract: empty change set → all false exit 0; >=1 match → flags
   exit 0; changed files with ZERO matches → SCOPE_ERROR=unmatched + the
   unmatched paths as comment lines + exit 2 (a new top-level layout now
   trips loudly instead of invisibly disabling reviewers); unresolvable
   base ref (shallow CI checkout) → SCOPE_ERROR=no_base + exit 2 instead
   of a green that means "we could not look". Every output line stays a
   shell-safe assignment or comment for sourcing consumers, which
   tolerate the nonzero exit today (source ... || true / eval).

3. Uncommitted work was invisible (#2299). /ship detects scope in Step 9,
   BEFORE it commits in Step 15, so the common start-work-then-ship flow
   ran the classifier against an empty diff and skipped every reviewer.
   The change set is now the UNION of committed diff + working tree +
   untracked files. Also from #2299: the single first-match-wins case
   made the nine flags mutually exclusive (Button.test.jsx set FRONTEND
   but not TESTS; util.test.ts the opposite) — each category now gets its
   own case, with BACKEND deliberately still excluding frontend
   component/view files. And file listing is NUL-safe (git diff -z), so
   non-ASCII paths no longer defeat extension globs via octal quoting.

Deliberate behavior change (flagged in #2299): with independent flags, a
backend test file sets BACKEND and TESTS, which can trip the security
specialist's SCOPE_BACKEND gate on test-only PRs — errs toward more
review, not less.

Table-driven tests cover every glob class (root api/, nested api/,
controllers, openapi, root/nested/prisma/db-migrate/db-data migrations,
dual-category test files, auth, prompts, docs, plain classes), the
four-state exit contract, dirty-tree + untracked visibility, and the
non-ASCII path case (39 pass in test/diff-scope.test.ts).

Fixes shaped by the reporters' patches: @grant-ship-it (#2526),
@mkyed (#2455), @ShahriarLak (#2299).

Fixes #2526
Fixes #2455
Fixes #2299

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(redact-prepush): don't re-scan commits a catch-up merge brought in

`remoteSha..localSha` is "everything new on this branch", which is not the
same as "everything new to the remote". Merge origin/main into a feature
branch and every commit main gained since that branch's last push becomes
an added line — content that is already published, already scanned, and
not this push's doing.

Two consequences, both observed:

  · FALSE HIGH FINDINGS. A placeholder connection string in a fixture
    someone else had already merged blocked an unrelated push as
    db.url_with_password, telling the operator to rotate a credential
    over a file they never touched. A guard that cries wolf on catch-up
    merges is one people learn to bypass reflexively — which is exactly
    how a real secret gets through.
  · OVERSIZED SCANS. The SCAN_CHUNK_BYTES comment already records a
    1,146,782-byte diff from "a feature branch catching up to a busy
    main" blowing the engine's 1 MiB cap. Same root cause, treated there
    as a size problem. Narrowing the range fixes the size too.

A two-dot range cannot express this: after merging main, neither the
remote tip nor the merge-base with main is an ancestor of the other, so
no single base excludes both.

The narrowed range is `rev-list localSha --not remoteSha --remotes`.
remoteSha STAYS the base — it is what git tells us the remote has, and is
authoritative in a way --remotes is not, since tracking refs can be
absent or stale. Using --remotes alone excludes nothing in a repo without
them, so every commit ever made reads as new. That is the same false
positive from the other direction, and it is what the existing test
"only NEW content is scanned (remote..local), not pre-existing" catches.

When excluding tracking refs changes nothing, this push has no catch-up
commits and the plain range already describes it exactly — so we defer to
it. That keeps every non-catch-up push on the original gitStrict diff
path, which is what #1946's fail-closed regression test exercises. A
narrowing that silently retired that test would be a worse trade than the
false positives it set out to fix.

Each commit is diffed alone. A merge's combined diff shows only content
present in no parent, so a secret introduced while resolving a conflict
is still caught while an ordinary merge contributes nothing.

Tests: 22/22 existing prepush tests still pass (two of them fail without
the remoteSha base and the defer-to-plain-range guard respectively —
verified by mutation). 5 new tests build real repositories on disk and
pin both directions: a catch-up merge no longer re-scans published
content, and secrets in new commits, in merge resolutions, and in
repos with no remote are all still scanned.

Absorbs PR #2592 by @Two-Six-Alpha-1115 (applied via git am -3; 5 new
tests pass in test/redact-prepush-scan-range.test.ts). Also narrows the
range for the rebased-force-push shape reported in #2573 — proven by the
follow-up regression test.

Co-authored-by: Scott <scott@peninsulaminerals.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(redact): parcel IDs are not phone numbers

A county tax-map parcel ID (APN) reads as a national-format phone number
to `pii.phone.e164` — the same collision class as the digit-only UUID
that `insideUuid` already guards. `12-3456789.000` matches, and so does
its normalized `123456789000`.

This is not a rare edge. Land, title and property-tax repos carry APNs
by the hundred; a single title branch pushed 2 MEDIUM findings, and the
same shape recurs in every fixture, mart and smoke in the domain. A
guardrail that cries wolf on the domain's primary identifier is one
people learn to wave through, which is how a real HIGH finding
eventually gets ignored.

The guard is deliberately narrow, in two tiers:

1. The DOTTED form is exempt on its own shape. No phone convention puts
   a dot before a trailing 3-4 digit group after a 4-8 digit middle.
   Hyphen-only variants (22-0001-000) are NOT shape-exempted — those
   genuinely are phone-shaped.

2. A DIGITS-ONLY span is phone-shaped in isolation, so it earns the
   exemption only by evidence: it must be the exact digit-normalization
   of a punctuated APN within the surrounding window. Fixtures and marts
   carry the pair; a real phone number has no such twin. This reads the
   document's own evidence instead of guessing from digits.

Verified against the unmodified engine over inputs spanning every rule
family (AWS, PEM, GitHub PAT, email, IP, credit card, SSN, timestamp,
UUID, nine phone formats): exactly one behavior changed, the APN pair.

The new test pins both directions and was proven red under mutation —
stubbing the guard to `return true` (the dangerous blanket-exemption
failure) fails 12 of 15; `return false` fails 3.

Absorbs PR #2591 by @Two-Six-Alpha-1115 (applied via git am -3; 96 tests
pass across test/redact-parcel-id-false-positive.test.ts +
test/redact-engine.test.ts, and the pattern-lint / CLI / prepush-hook /
autoredact suites stay green).

Co-authored-by: Scott <scott@peninsulaminerals.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test: prove the rebased force-push shape is scanned correctly (#2573)

#2573: after `git rebase origin/main`, the feature branch's remote tip
still exists locally (the pre-rebase tip) but is no longer an ancestor of
HEAD, so the old `remoteSha..localSha` range swept in every upstream
commit rebased onto — 1.14 MiB scanned instead of 0.27 MiB on the
reported repo, tripping the engine's 1 MiB cap and blocking the push
with engine.input_too_large (a HIGH that meant "the engine never ran",
not a finding).

The catch-up-merge narrowing (`rev-list localSha --not remoteSha
--remotes`) covers this shape too: the upstream commits are reachable
from origin/main's remote-tracking ref, which exists by construction —
you cannot have rebased onto origin/main without it. No residual gap
found; this lands the proof alone, end-to-end through the actual hook
binary with the real pre-push stdin protocol:

- fixture sanity: the pre-rebase tip exists locally, is NOT an ancestor,
  and the OLD two-dot range would have swept in the upstream credential
- a clean rebased force-push passes — someone else's already-published
  HIGH-shaped fixture no longer blocks it
- coverage is not narrowed: a HIGH in a rebased commit of our own still
  blocks
- the scanned commit set is exactly the rebased own commits, so scan
  size is proportional to OUR work, not to how busy main was

Analyzed non-gap, recorded in the test header: upstream commits in NO
remote-tracking ref cannot arise from the standard flow — rebasing onto
origin/<branch> requires the tracking ref, and rebasing onto a purely
local branch means the "upstream" content was never published, so
scanning it is correct.

Fixes #2573

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): ratchet four skeleton-size caps for the wave's preamble growth

The #2499 project-scoped-MCP jq entry-resolution adds ~340 bytes to every
brain-sync preamble block, and the wave's doc additions push four skills
3-91 bytes past their v1.64/v1.65 parity caps. Re-measured per the ratchet
protocol: plan-ceo-review 92,531 → cap 93,000; document-release 56,571 →
57,000; design-consultation 70,003 → 70,500; cso 75,891 → 76,400.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(todos): file the v1.67 fix-wave deferrals + ZeroEntropy sunset deadline

The wave plan's "Cut from this wave" list becomes a durable next-wave queue:
Windows omnibus mining, AskUserQuestion numbering redesign, typecheck infra,
Chromium profile migration, triggers-frontmatter decision, release-tag
upgrade semantics, and the 15-PR feature triage queue. ZeroEntropy's Sept 4
2026 shutdown is filed P1 (calendar-driven — gbrain's default embedding
provider).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* deps(browse): bump playwright + playwright-core to 1.62.1 (P0 #2554 vehicle)

Split from dependabot #2582 per plan OV3: this commit bumps ONLY
playwright (^1.58.2 -> ^1.62.1, lock resolves playwright@1.62.1 +
playwright-core@1.62.1 exactly). puppeteer-core, @huggingface/transformers,
marked, and socks are deliberately NOT bumped here — they land separately
(73b) gated on the ONNX sidecar smoke.

Why: bun.lock pinned playwright(-core)@1.58.2, whose Chromium build
macOS XProtect now kills on launch — browse is dead on macOS (#2554).
1.62.1 ships Chromium 151.0.7922.34 (headless shell v1234), which
launches clean.

Verification: bunx playwright install chromium (Chrome Headless Shell
151.0.7922.34 downloaded), then the full browse suite from browse/:
2016 pass / 32 skip / 2 fail across 129 files (133.9s). Both fails are
playwright-independent: data-platform.test.ts "rejects paths in cwd"
expects <cwd>/package.json to exist (browse/ has none; passes from repo
root, the shard runner's cwd — 15/15), and stealth-webdriver.test.ts
passes standalone (15/15) — a 5s-timeout flake under full-suite parallel
load.

Fixes the vehicle half of #2554 (self-heal lands next commit).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): XProtect launch-kill self-heal — classify, quarantine-clear, bounded reinstall (P0 #2554)

macOS XProtect definition updates can start SIGKILLing the exact Chromium
revision the lockfile pins (xprotectd killed revision 1208's headless shell
at spawn; the failure surfaced as a generic launch timeout). New
browse/src/xprotect-heal.ts heals it, once per process:

- Classifier (F9): positive signatures sourced from the #2554 report +
  Playwright's launch-error format (signal=SIGKILL process-exit lines, and
  launch timeout WITH a <launched> marker), negative-checked FIRST against
  missing executable, spawn EACCES/EPERM, Linux sandbox denials, and plain
  exitCode=1 crashes. darwin-gated.
- Heal (F4 one-shot, in-memory flag): clears com.apple.quarantine via
  `xattr -dr` on chromium* revision dirs in the Playwright cache ONLY —
  never a GSTACK_CHROMIUM_PATH bundle (probePoisonedChromiumBundle's scope
  contract, double-gated at the call sites via usesCustomExecutable).
- Reinstall (E1/ENG-OV3): `bunx playwright install --force chromium` run
  FROM THE GSTACK INSTALL ROOT — the root whose
  node_modules/playwright-core/browsers.json pins the SAME chromium
  revision our embedded playwright-core expects (a cwd-resolved bunx would
  fetch latest and heal to the wrong revision). Bounded at 120s with a
  process-GROUP SIGKILL on timeout; on any heal failure the caller gets the
  ORIGINAL launch error + manual `bunx playwright install chromium`
  guidance — the CLI never hangs.
- Verification (F9): post-install asserts the REGISTRY-derived executable
  path exists (the revision dir playwright-core 1.62.1 expects), not merely
  install exit 0.
- Logging (F11): every action emits one structured stderr line
  ([browse:xprotect-heal] JSON).

All three launch sites in browser-manager.ts (headless launch, headed
launchPersistentContext, handoff relaunch) route through
launchWithXProtectHeal with one post-heal retry. setup's
ensure_playwright_browser failure path gains the same quarantine-clear
(_clear_playwright_quarantine, Darwin-only, Playwright cache scope) before
its Chromium reinstall.

Tests: browse/test/xprotect-heal.test.ts — 33 pass (classifier both
polarities, one-shot guard incl. failed-heal consumption, custom-executable
scope, registry-revision expectation vs playwright-core browsers.json,
install-root revision matching, quarantine-clear scope, wrapper retry +
guidance surfacing). browser-manager unit/custom-chromium: 36 pass.
bridge-chromium-e2e real-launch smoke: 3 pass. setup-windows-fallback
ln-invariant: 9 pass. bash -n setup: clean.

Fixes #2554.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): daemon owns signal policy — handleSIG*:false at launch sites + SIGHUP shutdown (#2220)

Playwright's default handleSIGINT/handleSIGTERM/handleSIGHUP handlers close
Chromium the moment the DAEMON process receives a signal — which fights the
deliberate headless SIGTERM-ignore in server.ts (Claude Code's Bash sandbox
fires SIGTERM when the parent shell exits between tool invocations; the
daemon survives it by design, but Playwright's handler killed its browser
out from under it). All three flags are now false at all three launch sites
(headless launch, headed launchPersistentContext, handoff relaunch).

ENG-OV4: the daemon had NO process-level SIGHUP handler (only SIGINT and
the mode-aware SIGTERM handler), so flipping handleSIGHUP:false alone would
remove the ONLY Chromium cleanup on hangup. server.ts now routes SIGHUP to
activeShutdown — the same shutdown path SIGINT uses (closes Chromium,
releases ports, removes the state file).

Static tripwire (browse/test/launch-signal-flags.test.ts, house
grep-style): every chromium.launch/launchPersistentContext site must carry
the three flags (site count pinned at 3 so a NEW launch site trips it),
server.ts must keep the SIGHUP→activeShutdown route, and the deliberate
headless SIGTERM-ignore must still exist (the reason handleSIGTERM:false is
safe — pinned in the test's header comment).

Tests: launch-signal-flags 3 pass; browser-manager-unit 28 pass;
bridge-chromium-e2e real-launch smoke 3 pass.

Fixes #2220.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): absorb #2414 residuals — EPERM-alive liveness + Windows-dead test tripwires (re-derived)

Re-derive of PR #2414 (SYKhayyat) onto current main. Most of the PR already
landed in earlier waves: the tick-derived RESPAWN_GUARD_WINDOW_MS, the
spawnTerminalAgent windowsHide flag, the process-liveness regression tests,
and the browse/test import.meta.path sweep are all on main. Two pieces
remained:

1. isProcessAlive EPERM semantics (error-handling.ts): on the signal-0 path,
   EPERM means the process EXISTS but we lack rights to signal it — that is
   ALIVE. Returning false made callers that validate liveness before killing
   (killAgentByRecord, the terminal-agent watchdog) skip the kill and respawn
   around a survivor — the self-reinforcing one-leak-per-tick chain from
   #2414/#2295. Matters for cross-user PID checks.

2. Six test/ files ADDED SINCE the PR reintroduced the exact Windows bug its
   second commit fixed: `new URL(import.meta.url).pathname` yields
   `/C:/Users/...` on Windows, so path.resolve prepends the cwd drive and
   every tripwire ENOENTs instead of asserting anything (egress-receipt,
   egress-lib, egress-receipt-wiring, gstack-egress-cli,
   pty-skill-seeding-wiring, skill-census). All six now use
   import.meta.path — Bun's absolute native path, identical arity.

The remaining #2414 piece — replacing the Windows tasklist probe with
signal-0 — lands as its own commit (#1952) on top of this shape.

Tests: the 6 touched test files 47 pass; process-liveness-windows +
error-handling 13 pass.

Re-derived from PR #2414 by @SYKhayyat. Fixes the residual of #2295.

Co-authored-by: SYKhayyat <shaulyoelkhayyat@gmail.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): isProcessAlive uses signal-0 on every platform — no more tasklist probe (#1952)

Replace the Windows tasklist shell-out in isProcessAlive with
process.kill(pid, 0), unifying all platforms on the POSIX idiom. Node maps
signal-0 to an OpenProcess existence check on Windows — and the Windows
daemon runs under Node (dist/server-node.mjs + bun-polyfill, the documented
oven-sh/bun#4253 fallback) — so the probe is portable.

Why the shell-out had to go, beyond the cosmetic conhost flash the watchdog
blinked into the foreground every 60s (#1952): a Bun.spawnSync that hits
its timeout still RETURNS with partial stdout, so the `.includes()` PID
match answered "dead" for LIVE processes under load — the false-negative
half of the #2414/#2295 leak chain. Signal 0 spawns nothing, cannot time
out, and is ~5 orders of magnitude faster (measurements in #2414). EPERM
still reports alive (process exists, we just can't signal it).

Layered on the post-#2414-absorb shape: test 3 in
process-liveness-windows.test.ts now asserts the probe is subprocess-free
on ANY platform (win32 exemption dropped), test 4's static tripwire loses
its error-handling.ts exemption (a `tasklist … PID eq` existence probe
anywhere in src/ now fails CI), and windows-spawn-hide.test.ts drops its
tasklist-in-error-handling needle (nothing spawns, which is stronger than
hiding the window).

Tests: process-liveness-windows + windows-spawn-hide + error-handling —
17 pass, 0 fail.

Fixes #1952.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): windowsHide sweep — flag every residual child_process site + full-census tripwire (#2160, #2415)

Add windowsHide:true at every remaining direct child_process call in
browse/src that could flash a console window on Windows:

- project-slug.ts (execSync gstack-slug)
- browser-skills.ts (cp.spawnSync git rev-parse)
- security-sidecar-client.ts (spawn — the LONG-LIVED Node sidecar, whose
  missing flag parked a console window on the taskbar for the daemon's
  whole lifetime)
- find-security-sidecar.ts (execFileSync node --version)
- meta-commands.ts (execSync git rev-parse in inbox + the osascript
  activate call)
- browse-client.ts (cp.spawnSync git rev-parse)
- file-permissions.ts (execFileSync whoami.exe — Windows-only, ran bare)
- cli.ts (nodeSpawn osascript)

windows-spawn-hide.test.ts gains a SWEEP test on top of the existing
needles: it censuses EVERY child_process binding in src/ (static imports
incl. aliases, `await import()` / require destructures, and `import * as
cp` namespaces — 15 call sites across 10 files today) and fails CI on any
call without windowsHide within its options window. Exemptions carry
reasons — the one today is domain-skill-commands' interactive $EDITOR
spawn (stdio:'inherit'; CREATE_NO_WINDOW would detach a console editor
into an invisible console).

Tests: windows-spawn-hide 5 pass; file-permissions 19 pass; browse-client
28 pass; browser-skill-commands 29 pass (81/81 combined).

Fixes the app-side half of #2160; closes out #2415's residuals.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): fail-fast busy-daemon semantics — never auto-kill an alive pid, add --force-restart (#2219)

The CLI killed live-but-busy daemons: a heavy dev-mode page (cold-compiling
Next.js route, timed-out navigation still churning) kept the daemon from
answering /health longer than the old ~1s probe window (3 × 250ms), so the
connection-error path declared it dead, SIGTERMed a healthy process, and
every kill lost the session's tabs, cookies, and logins (reproduced 4/4 in
the #2219 report).

New contract (decision 9 / F10):

- probeHealthWithBackoff is budget-based: ~8s total
  (HEALTH_PROBE_TOTAL_BUDGET_MS), 500ms intervals, each probe self-bounded
  at 2s — sized to the observed busy windows.
- decideDaemonRestart (pure, exported, unit-tested) encodes the IRON RULE:
  healthy-after-probe → retry the SAME daemon; alive+unhealthy →
  "daemon busy — retry or --force-restart" + NONZERO exit, daemon untouched;
  only a DEAD pid (or an explicit --force-restart) reaches kill+restart.
- --force-restart global flag (extractGlobalFlags): the one consent path
  that replaces a live daemon, always announcing the state it costs.
- Wired at all three kill sites: sendCommand's connection-error branch,
  ensureServer's stale-state path (which previously killServer'd any alive
  pid whose single 2s health probe missed), and connect — which used to
  "Kill ANY existing server" and now refuses to replace a healthy daemon
  without 'browse disconnect' or --force-restart. pair-agent's internal
  headed switch passes --force-restart explicitly (the mode switch is that
  command's stated purpose), preserving its behavior.

E5 IRON RULE regression tests (busy-daemon-iron-rule.test.ts, real spawned
CLI + fake daemons + live sleep-pid stand-ins per the
busy-daemon-recovery.test.ts pattern): healthy daemon SURVIVES connect
(refused with guidance, pid alive, state file untouched); wedged-alive
daemon + plain command → busy report, nonzero exit, pid alive; wedged
daemon + --force-restart IS killed and a real replacement daemon serves the
command. Plus pure-function coverage of all four decision outcomes and the
~8s budget pin.

Tests: busy-daemon-iron-rule 8 pass (16.7s, includes a real daemon
lifecycle); busy-daemon-recovery + proxy-config + daemon-mismatch-refuse +
cli-lock + cli-start-final-healthcheck + cli-setsid-daemonize 39 pass.

Fixes #2219.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): `stop` on a dead daemon is success — never boots a daemon to stop it (#2254)

Two changes, one contract:

- Pre-server short-circuit: `browse stop` is handled BEFORE ensureServer().
  No daemon state → "nothing to stop", exit 0. Stale state (dead pid AND
  dead port) → clean the state file, exit 0. The old flow routed stop
  through ensureServer(), which started a fresh daemon + Chromium
  (multi-second boot, resource churn) purely so it could be told to shut
  down — or crashed on the stale state.
- Reconnect branch: a connection error while sending `stop` where the pid
  turns out dead (daemon died mid-flight, between the short-circuit check
  and the send) is treated as SUCCESS — the desired end state (no daemon)
  already holds — instead of the crash-restart path.

Integration tests (stop-dead-daemon.test.ts, real spawned CLI + scratch
BROWSE_STATE_FILE): stop with no state exits 0 and spawns nothing (a
spawned daemon would have written the state file); stop with a stale state
file (dead pid + verified-closed port) exits 0, cleans the state, and
spawns nothing.

Tests: stop-dead-daemon 2 pass; busy-daemon-iron-rule 8 pass;
busy-daemon-recovery 1 pass (11/11 combined).

Fixes #2254.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(upgrade): /gstack-upgrade stops a stale daemon — deferring to a busy one (#2551)

A browse daemon started before an upgrade keeps serving the OLD binary's
code after `git reset --hard` + `./setup` — the running process holds the
old executable, so users on the "new" version kept getting pre-upgrade
behavior (and config-mismatch refusals against the new CLI) until they
happened to stop it by hand.

New unconditional Step 4.8 in gstack-upgrade/SKILL.md.tmpl (+ regen, same
commit): compare the running daemon's recorded binaryVersion (the
readVersionHash git-SHA the server stamps into its state file) against the
freshly built browse/dist/.version.

- Stale + responsive → `browse stop` (graceful), telling the user
  old→new hash; the next command boots a daemon on the new binary.
- Stale + BUSY → DEFER (decision 10): never kill a busy daemon during
  upgrade. Print the old→new hash and the escape hatch —
  `browse stop` when it finishes, or `browse --force-restart stop` now.
- Dead pid / matching hash / no state → silent no-op.

Tests: skill-validation + gen-skill-docs 731 pass after regen.

Fixes #2551.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): terminal-agent allocates from the fixed port scan range, not port:0 (#2314)

The terminal-agent bound `Bun.serve({ port: 0 })` and kept that OS-assigned
port for its whole (weeks-long) lifetime. `port: 0` draws from the OS
EPHEMERAL range (49152-65535 on macOS) — the exact pool every short-lived
`app.listen(0)` test server draws from — so the agent squatted ports that
test suites expected to receive and silently absorbed their traffic as
phantom 404s (two squatting daemons verified in the report).

Fix per decision 8: extract the main server's port allocation into
browse/src/port-allocator.ts (checkPortAvailable / isPortAvailable /
findAvailablePort + the 10000-60000 range constants and the actionable
sandbox-vs-occupied error formatters, all verbatim from server.ts) and make
BOTH long-lived listeners use it — server.ts's findPort is now a thin
findAvailablePort(BROWSE_PORT) wrapper, and terminal-agent's buildServer
takes a pre-allocated port from the same range. No terminal-port consumer
carries a range assumption (they read the port file), verified by grep.

Tests: terminal-agent-port-range (new — allocator stays inside
10000-60000 and below the 49152 ephemeral floor, explicit-port honored,
occupied-explicit throws, static tripwires pin no-port:0 in
terminal-agent.ts and the shared wrapper in server.ts) + findport +
terminal-agent-integration/session-routing/detach-reattach +
dual-listener: 67 pass, 0 fail.

Fixes #2314.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): capture daemon stdout/stderr to browse-daemon.log + Windows polyfill spawn fixes (re-derived from #2461)

The detached daemon's stdout/stderr were wired to 'ignore' on every
platform, so every console.error('[browse] FATAL: ...') from a Chromium
crash, uncaughtException, or unhandledRejection was discarded at the OS
level — a crash-and-respawn looked identical to every other dropped
session, with nothing on disk recording why. Both spawn paths now redirect
to <stateDir>/browse-daemon.log (append mode, accumulates across respawns):
the Unix path via an fd from openDaemonLogSink(), the Windows path by
opening the fd INSIDE the node -e launcher string (an fd opened in cli.ts
would not cross the spawn boundary). Unwritable state dir falls back to
'ignore' rather than failing the launch.

Capturing daemon output is what surfaced the PR's second fix, still valid
on current main: bun-polyfill.cjs's Bun.spawn/spawnSync called Node's
child_process with a bare command name, which Windows can't resolve without
PATHEXT lookup ("spawn bun ENOENT" from the terminal-agent respawn path).
Routed through cross-spawn on win32 (now a direct dependency; already in
the tree transitively via @modelcontextprotocol/sdk) — the PR verified
empirically that shell:true does NOT neutralize cmd.exe metacharacters
reachable via `$B skill run` arg passthrough, and that Node refuses .cmd
spawns without a shell (CVE-2024-27980), so cross-spawn's combined PATHEXT
resolution + argument escaping is the only correct shape. The PR's third
fix (resolveDisconnectCause throwing "browser?.process is not a function")
already landed on main via the #2085 typeof guard — not re-applied.

F6 log hygiene (daemon-log-hygiene.test.ts): needle tests pin the log
wiring on both spawn paths (and that stdio 'ignore','ignore','ignore'
never returns), that bun-polyfill stays on cross-spawn with no shell:true,
that NO console.* call in src/ passes a token value (interpolated or bare
arg), and that the page-content carrier modules (tab-session, buffers,
content-security, activity) stay console-free — so neither AUTH_TOKEN nor
unsanitized page-derived strings can reach browse-daemon.log.

Tests: daemon-log-hygiene + bun-polyfill + windows-spawn-hide +
cli-setsid-daemonize 21 pass; stop-dead-daemon + busy-daemon-iron-rule
(exercises a REAL daemon boot through the new log-fd wiring) 10 pass.

Re-derived from PR #2461 by @phuttimatebenchanakatkul.

Co-authored-by: phuttimatebenchanakatkul <phuttimatebenchanakatkul@gmail.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: raise gbrain version-probe timeout to 10s on Windows

On Windows the gbrain CLI is a .cmd shim that runs `bun run cli.ts`.
A cold spawn takes over the 2s timeout in resolveGbrainBin (warm runs
are ~700ms), so the probe times out, localEngineStatus classifies the
engine as "no-cli", and the 60s status cache then serves that false
negative to every skill preamble and sync run. /sync-gbrain skips the
memory stage with "gbrain CLI not on PATH" even though the CLI works.

Give the shim 10s of headroom, gated on NEEDS_SHELL_ON_WINDOWS so
POSIX keeps the cheap 2s probe. Applies to both resolveGbrainBin and
readGbrainVersion.

Observed on Windows 11, bun 1.3.14, gbrain 0.42.59.0.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): remove the dead security shield + unfed /health.security (re-derived from #2557)

The sidebar's SEC shield has been dead UI since the PTY terminal rewrite:
nothing set its data-status, nothing unhid it, and the /health.security
field behind it read getStatus() off ~/.gstack/security/session-state.json
— a file whose ONLY writer (sidebar-agent.ts) was deleted with the chat
path. /health therefore reported a permanent 'inactive', or a stale
FALSE-GREEN 'protected' wherever an old state file survived on disk (a
single unit-test run was enough to plant one). A green shield sourced from
leftover state reads as "no threats detected" when the real state is "not
measured" — the same fail-open class as #2026.

Removed (dead surfaces only): the shield markup/CSS and the stale
sidepanel.js comment; the /health security field and server.ts's getStatus
import; getStatus / SecurityStatus / StatusDetail / SessionState /
read+writeSessionState (and security.ts's dead child_process import); the
session-state + getStatus unit tests — including the round-trip test that
wrote real fixture data into ~/.gstack and left /health green forever.
(The PR's security-sidepanel-dom.test.ts deletion already happened on main
via #2230; its resolveDisconnectCause guard landed via the #2085 typeof
fix. Neither re-applied.)

Kept, per ENG-OV9 — security.ts has LIVE consumers: the pure combiner
(combineVerdict + THRESHOLDS), canary utilities, and extractDomain stay;
server.ts's /pty-inject-scan L4 path (isSidecarAvailable + scanWithSidecar)
is untouched. browse/test/server-security-surface.test.ts pins BOTH
directions: the dead surface stays dead (no /health security field, no
getStatus import, no reader of the security session-state file, shield
markup gone) and the live half stays live (sidecar wiring in server.ts,
combiner/canary exports in security.ts, /health carries no token — the
v1.63 regression wall). A future re-feed from LIVE signals must update
that test deliberately rather than resurrect the state-file path.

F13 (same commit): CLAUDE.md's Sidebar security stack section, ARCHITECTURE.md's
prompt-injection Visibility + critical-constraint paragraphs, and
BROWSER.md's security section now describe the removed surfaces as history,
not live features.

Net -166 lines. Tests: server-security-surface + security +
security-adversarial(+fixes) + security-integration + server-auth 114 pass;
sidepanel-* + extension-token + extension-sender-auth 58 pass / 2 skip.

Re-derived from PR #2557 by @frederik-kaster-noygear.

Co-authored-by: Frederik Kaster <frederik.kaster@noygear.ai>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): capture browser-skill subprocess output via temp files, not pipes (core of #2559)

Under a loaded parent, the FIRST piped Bun.spawn in a process
intermittently yields an empty stderr even though the child wrote it and
exited 0 — measured identically with readers-attached-before-exit and with
a manual getReader() drain, so it's loss inside the async pipe plumbing,
not read ordering. It flaked `$B skill test` (bun test writes its banner to
stdout and the pass/fail summary to stderr, so a dropped stderr silently
degraded the result to just the banner) and would blank a skill's JSON
result on `$B skill run` while still reporting success.

New runToFiles() points the child's stdout/stderr at temp files via
Bun.file() (never raw fds — closing self-opened fds around a spawn tripped
Bun's fd bookkeeping into a stray epoll_ctl EBADF), awaits exit, then reads
the files: the kernel has flushed everything by child exit, so the
post-exit read is complete, and chatty children can't stall on a full pipe
buffer. Both handleTest and spawnSkill route through it (timeout + capped
read preserved via timeoutMs/maxStdoutBytes). Bun.spawnSync would also
capture reliably but would deadlock: a spawned skill calls back into this
same daemon on GSTACK_PORT.

The `tests passed for "<name>"` fallback is gone — a passing bun test
always prints a summary, so exit 0 with no output means the run was NOT
captured, and handleTest now throws instead of fabricating success. The
E2E assertion checks both stream halves (banner + summary + "Ran N tests")
instead of the loose alternation whose `tests passed` branch matched the
synthetic fallback vacuously. A static tripwire pins the structure:
runToFiles owns the module's ONLY Bun.spawn, and no site reads child
output via stdout:'pipe' / new Response(proc.stdout) / getReader().

Scope: the PR's repo-wide test-file sweep is deliberately not absorbed —
this is the core only, per the wave plan.

Tests: browser-skill-commands + browser-skills-e2e + browser-skill-write
74 pass, 0 fail.

Re-derived from PR #2559 by @frederik-kaster-noygear.

Co-authored-by: Frederik Kaster <frederik.kaster@noygear.ai>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(browse): allow Emulation.setEmulatedMedia on the CDP allowlist (re-derived from #2419)

Adds Emulation.setEmulatedMedia to the deny-default CDP allowlist:
tab-scoped, trusted output (returns an empty result — no page content).
Unlocks media type/feature overrides (prefers-color-scheme,
prefers-reduced-motion, prefers-contrast, forced-colors) via `$B cdp`, so
dark-mode and a11y CSS branches are testable without a headed toggle. Like
setUserAgentOverride, the override persists on the tab until cleared with
an empty features array — noted in the entry's justification.

Registry test pins the entry (allowed + tab scope + trusted output); the
PR's VERSION/CHANGELOG stamping is stripped per wave convention (versioning
happens at /ship).

Tests: cdp-allowlist 7 pass, 0 fail.

Re-derived from PR #2419 by @meshailabs.

Co-authored-by: meshailabs <devsupport@meshai.dev>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): create node bundle output directory

* fix(deps): bun-patch playwright-core 1.62.1 — windowsHide at launch + taskkill (#2160, #1989)

The repo's first patchedDependencies entry. playwright-core's bundled
process launcher (lib/coreBundle.js in the 1.62.x layout) spawns browser
children without windowsHide — Node defaults it to FALSE for
child_process.spawn — so Chromium children could flash a console window on
Windows, and its force-kill path shells `taskkill /pid <pid> /T /F`
through cmd.exe with the same omission. Both sites now pass
windowsHide: true via patches/playwright-core@1.62.1.patch (generated with
`bun patch` / `bun patch --commit`).

Coherence verified end-to-end: rm -rf node_modules && bun install applies
the patch cleanly (both sites present in the reinstalled tree), and a real
chromium.launch() through the patched bundle works.
browse/test/playwright-core-patch.test.ts pins the three-legged invariant
statically — package.json's patchedDependencies key is VERSION-KEYED
against the installed playwright-core, the patch file exists and carries
both sites, bun.lock records the patch, and the installed bundle actually
has it applied — so a future playwright bump that forgets to re-target the
patch fails CI with the exact key to regenerate (revert pairing: dropping
the c25 bump requires dropping this patch too).

Tests: playwright-core-patch 4 pass, 0 fail.

Fixes #2160, #1989.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(preamble): probe AGENTS.md for skill routing; team-init resolves GSTACK_ROOT (#2500)

The HAS_ROUTING preamble probe only checked CLAUDE.md, so repos that route
skills via AGENTS.md (the cross-harness convention for Codex, Cursor, and
generic agent hosts) reported HAS_ROUTING: no and got nagged to create
CLAUDE.md. The probe now iterates CLAUDE.md and AGENTS.md.

gstack-team-init's required-mode enforcement (the CLAUDE.md verification
snippet and the generated .claude/hooks/check-gstack.sh) hardcoded
~/.claude/skills/gstack, false-blocking installs living at any other host's
global root or the migrated ~/.gstack/repos/gstack location. Both sites now
resolve the install root: GSTACK_ROOT env first, then every registered
host's globalRoot, then the migrated repo path. Install instructions keep
pointing at the canonical Claude location.

test/routing-probe.test.ts pins both: rendered-preamble assertions plus a
live execution of the extracted probe block (AGENTS.md-only repo => yes),
and a drift test that requires every hosts-registry globalRoot to appear in
team-init's probe list.

Re-derived from PR #2500 onto current code (the PR's 52-file regen was
discarded and regenerated here). Contributed by @gamerey43.

Fixes #2500

Co-authored-by: gamerey43 <gamerey43@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(resolvers): empty find must not fall through to cwd (#2483)

find ... | xargs ls -t runs ls with NO operands when find matches nothing —
GNU xargs still invokes the command once, and ls -t with no operands lists
the current directory. Three sites misfired on fresh installs (no ceo-plans /
checkpoints / plans yet), exactly where a wrong answer is least likely to be
recognized: review.ts's plan fallback silently adopted a random cwd .md as
"the plan", and Context Recovery listed unrelated cwd files as RECENT
ARTIFACTS / LATEST_CHECKPOINT.

All three now use xargs -r ls -t, mirroring the shape the sibling
bin/gstack-codex-session-import fix (#2482) landed with: -r pins the BSD
skip-on-empty behavior on GNU too, and BSD xargs accepts -r as a no-op.

test/empty-find-fallthrough.test.ts pins it four ways: no bare xargs ls -t
in scripts/ or bin/, both rendered Context Recovery sites guarded, a live
execution proving an empty checkpoints dir yields no checkpoint (not a decoy
cwd file), and a rendered-SKILL.md sweep.

Re-derived from PR #2483 onto current code. Contributed by @tranthanhnhatkhoa.

Fixes #2483

Co-authored-by: tranthanhnhatkhoa <tranthanhnhatkhoa@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(codex): retire deprecated web-search flag behind one CODEX_WEB_SEARCH_FLAG constant (#2525)

codex >=0.144 deprecates the legacy --enable-based web_search_cached
spelling (web search is on by default; --enable <FEATURE> now means
-c features.<name>=true, verified against codex 0.147.0's exec --help).
Every gstack codex invocation now passes -c 'web_search="cached"' instead.

The flag previously lived inline at 19 raw sites. Per ENG-OV11a the 10
template-inline sites (autoplan/SKILL.md.tmpl x4, codex/SKILL.md.tmpl x6)
convert to a shared {{CODEX_WEB_SEARCH_FLAG}} token first, so ONE resolver
constant (CODEX_WEB_SEARCH_FLAG in scripts/resolvers/constants.ts) now
covers all sites: review.ts x5, design.ts x3, the token resolver in
utility.ts, and the tool-map helper comment.

codex/SKILL.md.tmpl's web-search prose guarantee is corrected: the -c form
explicitly overrides a top-level web_search config (the legacy flag yielded
to it), and native codex review disables web search regardless of
configuration, so the flag is a no-op on the default Review path.

test/codex-web-search-flag.test.ts is the safety net: repo-wide grep
tripwires assert NO rendered SKILL.md/section/golden and NO source file
carries the deprecated spelling, and that the token resolves in rendered
output.

Fixes #2525

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(question-tuning): interpolate the absolute question-registry path (#2489)

The Question Tuning preamble pointed agents at a RELATIVE
scripts/question-registry.ts in the same sentence whose ${bin} path renders
absolute. Agents run with cwd in the USER'S project — the relative lookup
never resolves, silently fails, and the documented {skill}-{slug} fallback
fabricates a singleton question_id every time (one observed
/plan-eng-review session: 21/21 unregistered ids, so no per-question
preference can ever attach).

The resolver now interpolates ctx.paths.skillRoot the way sibling resolvers
interpolate bin paths: ~/.claude/skills/gstack/scripts/question-registry.ts
on Claude, $GSTACK_ROOT/scripts/question-registry.ts on env-var hosts.

test/question-tuning-registry-path.test.ts asserts the rendered path per
host, forbids the bare relative shape, and checks the target file exists in
the install tree.

Fixes #2489

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(resolvers): slug-canonical branch form in file-path positions (#2550, #1851)

Branch-name-to-filename had incompatible rules across writer and readers:
gstack-review-log WRITES <branch>-reviews.jsonl with the gstack-slug
canonical form (tr '/' '-' then tr -cd 'a-zA-Z0-9._-', bin/gstack-slug:178),
but Context Recovery PROBED it with raw $_BRANCH from git branch
--show-current — so for any branch containing a '/' the REVIEWS line never
fired (#1851's reader half of #1127). The probe now uses ${BRANCH:-unknown},
the canonical value the gstack-slug eval on the block's first line already
sets. review.ts's plan content-search BRANCH gains the missing tr -cd half
so it matches the same canonical pipeline.

Full audit of the 5 raw $_BRANCH interpolation sites in scripts/resolvers/
(E3): generate-context-recovery.ts:16 (reviews.jsonl path) -> canonical
BRANCH; :19/:21 (timeline.jsonl content greps) KEEP raw $_BRANCH because the
timeline writer (preamble's gstack-timeline-log call) stores the raw branch
in the "branch" field — slugging the reader would break that pairing;
generate-preamble-bash.ts:29 (display echo) and :97 (timeline data write)
keep raw by design. The *-$BRANCH-design-*.md family (review.ts:313 + 3
plan-review templates) is a consistent tr '/' '-' writer/reader pair and is
deliberately untouched.

test/branch-slug-hygiene.test.ts pins the discipline: a rendered-output
sweep forbids raw $_BRANCH adjacent to a path separator or as a filename
prefix in ANY generated SKILL.md/section, and a live round-trip on a
feat/slash branch proves gstack-review-log's write is found by the rendered
probe (with the raw-form shape as a negative control).

Reader-side fix folded from PR #1851. Contributed by @harjothkhara.

Fixes #2550
Fixes #1127

Co-authored-by: harjothkhara <harjothkhara@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ship): review fix loop stays in one invocation, bounded at 3 cycles (#2391)

The pre-landing review committed its fixes, then STOPPED and told the user
to run /ship again — 5-10 manual invocations on a branch with a few
auto-fixable findings, violating /ship's fully-automated contract. There is
no user decision between those invocations; each rerun just repeats the
workflow until a review pass produces no fixes.

ship/sections/review-army.md.tmpl item 7 now makes the loop explicit: after
committing fixes, re-run the test suite (Step 5) and this review (Step 9
items 2-6) in the SAME invocation, repeating until one full pass applies
zero fixes, then continue to Step 12. Bounded at 3 fix cycles — a review
that will not converge STOPs with a report of which findings keep
reappearing (a genuine blocker), never with a rerun request.

test/ship-review-loop.test.ts asserts no rendered ship surface (section +
all three host goldens) carries the STOP-and-rerun shape and that the
bounded loop language renders.

Fixes #2391

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(codex): model round-trip probe — an unusable configured model fails fast with guidance (#2477)

The auth probe accepts 'auth exists' as readiness, but a ChatGPT account
with a stale model pin in ~/.codex/config.toml passes it and then EVERY
mode dies with an HTTP 400 ('The <model> model is not supported when using
Codex with a ChatGPT account') and no pointer to where the model came from
— one report burned ~40 minutes and four invocations plus a strings dump
of the binary before finding the one-line config fix.

bin/gstack-codex-probe gains _gstack_codex_model_probe: a short
codex exec 'reply OK' round trip with the configured model, gated behind
the cheap auth probe at all three preflight sites (codex Step 0.5, the
shared codexPreflight in scripts/resolvers/constants.ts — which grows a
model_unusable CODEX_MODE branch — and autoplan's availability chain).
Verdicts: MODEL_OK (cached 1h, keyed on config.toml + auth.json mtimes so
a pin edit or re-login re-probes immediately), MODEL_UNUSABLE (exit 1,
prints the rejection plus HINTs at the model= pin and the
[notice.model_migrations] table), MODEL_PROBE_INCONCLUSIVE (timeout or
transient: FAIL-OPEN so network luck never wedges codex mode).

The 'Model not supported (HTTP 400)' Error Handling entry already shipped
in v1.64.0.0; Step 0.5's prose now routes MODEL_UNUSABLE to it.

test/codex-model-probe.test.ts drives all four behaviors against a stubbed
codex binary (invocation-counted cache hit, hint content, fail-open
polarity, mtime invalidation).

Fixes #2477

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(review): skip nested codex spawns when already running under a Codex host (#2519)

/review executed inside a Codex host spawned the codex specialist passes
anyway — the same model reviewing itself, at multiplied cost (observed:
15M tokens for a single /review).

Detection per maintainer decision 7: a presence probe of the Codex session
env. A live Codex session exports CODEX_THREAD_ID and CODEX_SANDBOX into
every shell it spawns — verified during implementation against a live
`codex exec 'env | grep -i codex'` capture on codex 0.147.0
(CODEX_THREAD_ID, CODEX_SANDBOX=seatbelt, CODEX_SANDBOX_NETWORK_DISABLED=1,
CODEX_CI=1). The shared codexPreflight in scripts/resolvers/constants.ts
(consumed by all three review.ts army blocks: adversarial, codex plan
review, codex doc review) now yields CODEX_MODE=under_codex and instructs
exactly one printed notice — '[running under Codex — nested codex passes
skipped; set GSTACK_FORCE_CODEX_REVIEW=1 to force]'. The override env var
forces the nested passes for users who really want them. codex/SKILL.md.tmpl
Step 0.5 gains the same probe: /codex under a Codex host stops with a
one-line notice, since its whole value is a SECOND model's opinion.

test/codex-under-codex-detection.test.ts runs the rendered preflight bash
under all four env combinations (thread-id only, sandbox only, forced,
clean) and asserts the probe + notice render in the three preflight
consumers and the codex skill.

Fixes #2519

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(build): convert MSYS paths for Bun in the Windows server-bundle build (#2452)

browse/scripts/build-node-server.sh resolves GSTACK_DIR with pwd, which
under MSYS/Git Bash yields a /c/... style absolute path that Bun cannot
open ('FileNotFound opening root directory') — the Windows Node-server
bundle build died at the first bun build. Convert via cygpath -m on
MINGW/MSYS/CYGWIN before deriving SRC_DIR/DIST_DIR.

Re-derived from PR #2452, taking only the cygpath build half — the PR's
icacls principal-ambiguity half already landed on main
(browse/src/file-permissions.ts's SID-form principal). Verified the build
bug still exists on current code before absorbing (build-node-server.sh:10
had no conversion). Contributed by @chiragborse1.

Co-authored-by: chiragborse1 <chiragborse1@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): update four main-side gen-skill-docs assertions to the T6 contracts

Three contracts moved under this theme and the assertions pinned the old
shapes:

- The routing-probe assertion expected the single-file
  'grep ... CLAUDE.md' shape; #2500 made the probe iterate CLAUDE.md AND
  AGENTS.md, so it now asserts the for-loop + quoted $_RF shape.
- The three Claude-output Codex-path bans tripped on ~/.codex/config.toml,
  which the shared codexPreflight's model_unusable branch (#2477) now
  documents in rendered output. That path is the Codex CLI's own config
  file — the same user-facing class as the already-exempt
  ~/.codex/sessions/ — so it is scrubbed before the host-path ban, with the
  reasoning recorded next to the existing exemptions.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(sync-gbrain): dream pack-capability WARN anchors to the graph phase

Fixes #2341. classifyDreamOutcome matched the bare phrase "does not declare
this phase", but gbrain's only emitters are the CONTENT phases
(extract_atoms, synthesize_concepts) — which the default base packs
legitimately skip while resolve_symbol_edges still runs. Every base-pack
brain therefore got the pack-capability WARN with its wrong, costly
remediation ("switch schema packs"), masking real graph problems. The match
now anchors to the graph phase (resolve_symbol_edges/extract_code_symbols);
a base-pack run with a built graph is clean, and a resolved-0 run gets the
honest 0-edge diagnosis.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(setup): install office-hours into the external-host runtime roots

Fixes #2449. plan-eng-review's inline office-hours step reads
$GSTACK_ROOT/office-hours/SKILL.md, but the codex/factory/opencode runtime
roots never installed it — the documented path pointed at nothing on every
external-host install (Codex on Windows was the reported repro). Each
runtime-root creator now links its host-rendered gstack-office-hours
SKILL.md at office-hours/SKILL.md.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(gbrain-install): name the real fix when an npm-installed bun breaks the shim

Fixes #2487. `npm i -g bun` puts POSIX/cmd/ps1 shims on %PATH% but never
bun.exe — and the gbrain.exe shim that `bun link` generates resolves bun.exe
specifically, so link succeeds and every gbrain call dies with bun's
misleading "bun is not installed in %PATH%" (which suggests installing a
second parallel bun). The D19 validation failure paths now detect the
condition on Windows and print the actual remediation: bun's own
process.execPath IS the hidden bun.exe — add its directory to PATH.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(ios-qa): document the bridge compatibility preflight and non-SwiftPM fallback

Re-derived from PR #2581 under the generated-file screening rule (template
hunk taken; SKILL.md regenerated). Prevents the agent from inventing project
wiring on apps the bridge doesn't support (ObservableObject-style or
non-SwiftPM apps): the preflight now names the compatibility check and the
manual fallback path.

Co-authored-by: Tim White <itstimwhite@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(deps): force adm-zip past CVE-2026-39244 via an override

Re-derived from PR #2485 as a resolution override rather than its direct-dep
bump: adm-zip reaches the tree only transitively (onnxruntime-node pins
^0.5.16), so a top-level copy at 0.6.0 would leave onnxruntime-node loading
the vulnerable 0.5.17 — which is exactly what the scanner PR's own lockfile
showed. The override forces every resolution to ^0.6.0.

Co-authored-by: anupamme <anupamme@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* deps: remove unused puppeteer-core; bump transformers/marked/socks

Completes the #2582 split (ENG-OV8). puppeteer-core had ZERO imports
repo-wide — a dead direct dependency whose only footprint was its CVE-prone
transitive chain (puppeteer-core > @puppeteer/browsers > proxy-agent >
get-uri > basic-ftp) and the pin test + basic-ftp override that existed
solely to guard it. Removing the dependency removes the surface: the
basic-ftp override and test/basic-ftp-security-pin.test.ts retire with it
(the lockfile resolves zero basic-ftp copies now). transformers ^4.2.0,
marked ^18.0.9, socks ^2.8.9 land per the dependabot group, gated on the
ONNX sidecar load+classify smoke passing with the bumped transformers
(28/28 sidecar+classifier+security tests green post-bump).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* chore(deps): bump the github-actions group across 1 directory with 10 updates

Bumps the github-actions group with 10 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [actions/checkout](https://github.com/actions/checkout) | `4` | `7` |
| [docker/login-action](https://github.com/docker/login-action) | `3` | `4` |
| [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) | `3` | `4` |
| [docker/build-push-action](https://github.com/docker/build-push-action) | `6` | `7` |
| [actions/dependency-review-action](https://github.com/actions/dependency-review-action) | `4.9.0` | `5.0.0` |
| [actions/upload-artifact](https://github.com/actions/upload-artifact) | `4` | `7` |
| [actions/download-artifact](https://github.com/actions/download-artifact) | `4` | `8` |
| [oven-sh/setup-bun](https://github.com/oven-sh/setup-bun) | `1` | `2` |
| [actions/cache](https://github.com/actions/cache) | `4` | `6` |
| [google/osv-scanner-action/.github/workflows/osv-scanner-reusable.yml](https://github.com/google/osv-scanner-action) | `3adb4b14a2b0623876d18d863a498b785fb3752d` | `f4cfcc01edc9c8b756a9b873b7a623ca674da51e` |

Updates `actions/checkout` from 4 to 7
- [Release notes](https://github.com/actions/checkout/releases)
- [Commits](https://github.com/actions/checkout/compare/v4...v7)

Updates `docker/login-action` from 3 to 4
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](https://github.com/docker/login-action/compare/v3...v4)

Updates `docker/setup-buildx-action` from 3 to 4
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](https://github.com/docker/setup-buildx-action/compare/v3...v4)

Updates `docker/build-push-action` from 6 to 7
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](https://github.com/docker/build-push-action/compare/v6...v7)

Updates `actions/dependency-review-action` from 4.9.0 to 5.0.0
- [Release notes](https://github.com/actions/dependency-review-action/releases)
- [Commits](https://github.com/actions/dependency-review-action/compare/2031cfc080254a8a887f58cffee85186f0e49e48...a1d282b36b6f3519aa1f3fc636f609c47dddb294)

Updates `actions/upload-artifact` from 4 to 7
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](https://github.com/actions/upload-artifact/compare/v4...v7)

Updates `actions/download-artifact` from 4 to 8
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](https://github.com/actions/download-artifact/compare/v4...v8)

Updates `oven-sh/setup-bun` from 1 to 2
- [Release notes](https://github.com/oven-sh/setup-bun/releases)
- [Commits](https://github.com/oven-sh/setup-bun/compare/v1...v2)

Updates `actions/cache` from 4 to 6
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](https://github.com/actions/cache/compare/v4...v6)

Updates `google/osv-scanner-action/.github/workflows/osv-scanner-reusable.yml` from 3adb4b14a2b0623876d18d863a498b785fb3752d to f4cfcc01edc9c8b756a9b873b7a623ca674da51e
- [Release notes](https://github.com/google/osv-scanner-action/releases)
- [Commits](https://github.com/google/osv-scanner-action/compare/3adb4b14a2b0623876d18d863a498b785fb3752d...f4cfcc01edc9c8b756a9b873b7a623ca674da51e)

* fix(test): scope rendered-output tripwires to repo sources; stop cdp-e2e's env leak

Two hermeticity holes surfaced by the wave's final gate. (1) The three T6
tripwires (branch-slug, codex-flag, empty-find) enumerated the whole tree
including the workspace-local .claude/ install, which is not generated
output and can carry dangling symlinks from unrelated sessions — one ENOENT
there failed all three. They now scan repo sources only. (2)
browse/test/cdp-e2e.test.ts mutated process.env.GSTACK_HOME at module scope
without restore; in one-process shard runs that leaks into every later test
file — observed baking cdp-e2e's temp render path into artifacts that
outlived it (53 dangling SKILL.md symlinks in a workspace install). The
original value is now restored in afterAll. The exact test that performed
the polluted relink remains unattributed; both known leak vectors are
closed and the workspace was repaired via an explicit gstack-relink.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): honest budget for the suite's one headed persistent-context launch

The launchHeaded/handoff parity test cold-launches a HEADED Chromium — 8-25s
on macOS, worse on the first launch of a freshly downloaded bundle (XProtect
scans it, the #2554 class) and under shard concurrency. bun's 5s default made
it the suite's most reliable false negative: it timed out identically on the
pre-wave baseline run of pristine main. 45s budget; passes 15/15.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): assemble redact fixtures at runtime — the guard caught its own wave

The pre-push redact guard BLOCKED this branch's first push: the wave's new
scan-range tests carried live-FORMAT fake credentials as literals (3 AWS key
shapes + a password-bearing DB URL), and the guard scans pushed diff bytes.
Same dogfood moment as the v1.64 wave, same rule: assemble the fixture at
runtime so the diff never carries a credential shape, never bypass the guard.
Runtime strings stay live-format for the hook under test. The guard works.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): sync ios-qa fixture mirrors with the #2585 DEBUG-guard templates

The #2585 absorb updated DebugBridgeTouch.m.template and
Package.swift.template but not their FixtureApp mirrors, failing the
template↔fixture parity gate. DebugBridgeTouch.m syncs byte-for-byte; the
fixture Package.swift takes only the template's new cSettings DEBUG define on
the Touch target (the fixture's own testTarget is fixture-only content the
parity normalization deliberately ignores — a naive full copy breaks the
XCTest invariant). 23/23 including the real swift build.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(slug): env-override runs never persist to the cwd cache; cache is GSTACK_HOME-aware

Found while closing the wave's eval gate: a test exporting
GSTACK_PROJECT_SLUG from the repo root persisted the override into the cwd
slug cache, silently rebinding the ENTIRE repo's session state (evals,
decisions, timelines) to the test's slug for every later env-less run. The
escape hatch is per-invocation by contract — it no longer writes the cache.
The cache dir also hardcoded $HOME while lib/bin-context.ts's native port
(#2561) reads it GSTACK_HOME-aware, so temp-home test runs littered the real
~/.gstack (observed: 2,528 stale temp-cwd entries, swept). Writer and reader
now key the same GSTACK_HOME-aware cache; regression tests pin both
behaviors.

Also raises the cso --diff eval budget (240s/25t → 360s/40t):
transcript-verified, the wave's legitimately-grown audit session completes
the report and dies in closing telemetry at ~215s under the old budget; the
full-audit sibling already runs at 300s.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): pin GSTACK_HOME in the slug walk-up cache tests

The cache dir became GSTACK_HOME-aware; these tests seed and assert cache
files under a temp HOME but spread the ambient env, so a sibling test
leaking process.env.GSTACK_HOME in a shared-process shard pointed the bin at
a different cache than the one under assertion (AC-2/AC-6 failed in shard
context, passed solo). The env now pins GSTACK_HOME to the temp home —
verified identical results with and without a simulated ambient leak.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): the cache-hygiene test strips ambient GSTACK_PROJECT_SLUG

Its env-less contract must be env-less: any ambient override leaking into a
shared-process shard flips the run into override mode, which correctly skips
the cache write the test asserts.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): ratchet ship's skeleton cap for the v1.66.1 merge union

Merging main's v1.66.1.0 (evidence-ledger prose in ship's template) on top of
the wave's growth lands ship at 90,333 bytes, 333 over its cap. Re-measured
per the ratchet protocol: cap 90,800.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(brain-sync): throttle + bound the detector push; empty-queue fast path

Review-army findings on the #2549 detector. (1) The preamble runs --once at
every skill boundary, so an unthrottled retry paid a full network push
attempt per boundary in exactly the steady states it targets (offline,
broken auth) — a captive-portal push can block 30-75s against the header's
"<1s when idle" promise. Attempts now stamp .brain-last-push-attempt and
retry at most every 10 minutes; the push never prompts (GIT_TERMINAL_PROMPT=0)
and bounds stalled transfers via git's low-speed limits (portable — stock
macOS has no timeout binary). (2) Author-scoped: only gstack-brain-sync's own
commits retry; a user's manual commit in ~/.gstack rides along on real drains
as before, never auto-published by the detector. (3) Empty-queue fast path
exits before the compute/rewrite python spawns — the steady state is now
cheaper than the pre-wave truncation code. (4) The queue rewrite warns on
failure instead of silently letting the status claim a drain that didn't
happen, counts held unparseable lines, and collapses duplicate lines on
rewrite. Throttle + delivery matrix cases added (37/37).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(version-bump): JSON version-paths get the npm translation; honest recovery messages

Review-army findings. A repo whose package.json carries the legacy 4-digit
mirror and pins it via .gstack/version-path would get "1.67.0.1" written into
a manifest npm rejects forever, with no drift state to catch it (a JSON
source is self-consistent by construction) — the JSON branch now writes the
npm-valid translation, warns when translation occurred, and surfaces the
requested form. Lockfile-failure messages now match reality per failure
point: classify never reads lockfiles, so "re-run and repair" was a false
promise when package.json was written and only the lockfile threw. Both
malformed-version messages read MAJOR.MINOR.PATCH[.MICRO], matching the
3-digit contract this wave ships.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(extension): remove the orphaned security-banner block; repair two dead CSS tokens

Design-review findings. The 197-line .security-banner component (incl. its
keyframes) had no producer — no JS has created the element since the
chat-path rip, the same dead-hidden-security-UI class as the #2557 shield
this wave removed; a tombstone comment points at git history if the banner
UX returns. Two pre-existing token bugs in the mem-toast styles: --zinc-700
was never defined so the button hover computed to transparent (now carries a
fallback), and --font-sans doesn't exist (now --font-system, which :root
defines).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(brain-sync): detector pushes only when ALL unpushed commits are its own; lock released on every exit

The unpushed-commit detector's author check was existential: any bot-authored
commit in origin/<branch>..HEAD armed a push of HEAD, silently publishing
interleaved user-authored commits in ~/.gstack. Now the gate requires the
author-scoped count to equal the total unpushed count — one user commit
disables the autonomous retry entirely (user commits still ride along when a
real drain pushes). Detached HEAD is excluded (origin/HEAD usually resolves,
making the retry a 10-minutely doomed push).

The lock-release trap now installs immediately after lock acquisition instead
of after the empty-queue fast path — the steady state at every skill boundary
leaked the lock dir and relied on stale-PID detection, which PID reuse defeats.
An INT during the detector's network push is covered too.

Matrix test: interleaved user commit blocks the detector, then a real drain
delivers everything.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(version-bump): version-path and package-json-path pins cannot escape the repository

.gstack/version-path and .gstack/package-json-path are repo-controlled
content. A cloned repo pinning '../../victim.json' — or an in-repo symlink
pointing outside — turned a routine bump into an arbitrary file overwrite
outside the repository. assertRepoContained rejects absolute paths, lexical
.. escapes, and symlink escapes (deepest existing ancestor realpath'd, so a
not-yet-created VERSION file is checked through its parent). Lockfiles that
are symlinks resolving outside the repo are skipped with a warning instead
of written through.

Six containment tests including the not-over-broad control (subdirectory
pins keep working).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): port allocator range actually stays below the ephemeral floor; terminal-agent retries a raced bind

RANDOM_PORT_MAX was 60000 while the module header documents 49152-65535 as
the pool to avoid — ~22% of allocations landed back inside it, preserving
the phantom-404 squatting class for both the daemon and the weeks-lived
terminal-agent. The cap is now 49151 and the range test pins the true
property (< 49152) instead of the old <= 60000 tautology.

terminal-agent boot also re-allocates and retries up to 5 times when
Bun.serve throws in the probe-then-bind TOCTOU window — previously a
concurrent bind killed the boot with no retry via main().catch → exit 1.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(codex-probe): bash-native watchdog when no timeout binary exists; negative-cache the deterministic model 400

Stock macOS ships neither coreutils gtimeout nor timeout(1); the wrapper's
fallback ran the command unwrapped, so a hung codex exec blocked the probe
and the calling workflow indefinitely. The fallback now backgrounds the
command, TERMs it at the deadline, and mirrors timeout(1)'s exit-124
contract — with the watchdog's stdout detached so an early finish never
blocks a caller's $(...) capture on the orphaned sleep.

MODEL_UNUSABLE is now negative-cached for 15 minutes (same exit-1 + hints
from cache). The deterministic 400 is config-driven, so re-probing every
preflight charged the affected user a 30s round trip plus real tokens per
review section, forever. Editing config.toml — the fix — changes the cache
signature and re-probes immediately; MODEL_PROBE_INCONCLUSIVE stays uncached.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): xprotect heal resolves the install root via os.homedir and keeps guidance on a failed retry

With HOME unset, the global-install candidate became the RELATIVE path
.claude/skills/gstack under the daemon's cwd — often an untrusted repo being
QA'd, whose planted node_modules would then be where the heal runs the
playwright install (repo-controlled code execution). os.homedir() plus an
absolute-or-skip guard closes the class.

launchWithXProtectHeal also wraps the post-heal retry: a second classified
failure previously propagated raw, dropping the manual-remediation guidance
exactly when the automatic path had just proven insufficient.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(make-pdf): --strict and --confidential join BOOLEAN_FLAGS; the guard test derives the set from source

Both flags are read as '=== true' booleans but were missing from
BOOLEAN_FLAGS, so 'generate --strict essay.md' still ate essay.md as the
flag's value — the exact #2514 failure the set exists to prevent. The
completeness guard hardcoded six names and could not catch it; it now
derives every boolean read from cli.ts itself (direct reads plus
booleanFlag pairs), so the next boolean flag fails the suite until it
joins the set.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(todos): file the v1.67 adversarial-review residuals + coverage-audit test-gap backlog

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v1.67.0.0: version bump (MINOR — full-tracker fix wave, pre-approved)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(changelog): v1.67.0.0 release summary + itemized changes with contributor credits

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(todos): mark the 2026-08-14 tracker-audit waves shipped in v1.67; re-file the four residuals

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(uninstall): provenance-gate the shape-2 and cursor sweeps; document the alias-name coupling

Three ways gstack-uninstall could touch a user's own skills:

- Shape 2 (real dir + symlinked SKILL.md) matched the link target against a
  bare *gstack* substring, so a skill symlinked from ~/tools/gstack-fork/ was
  wiped on uninstall. The gate now requires "gstack" as an anchored path
  segment (gstack/*|*/gstack/*, same pattern as shape 1) AND the dir name in
  gstack's skill inventory (parity with shape 3); anything else is listed to
  stderr, never deleted.
- The new Cursor removals (~/.cursor/skills/gstack* and repo-local
  .cursor/skills/gstack*) rm -rf'd any glob match with no provenance check,
  so a hand-written ~/.cursor/skills/gstack-fork-notes was swept. Real dirs
  now require the AUTO-GENERATED banner in SKILL.md; non-matching dirs are
  kept and listed. Legacy codex/factory/kiro globs are untouched (tracked in
  TODOS as a follow-up).
- The _INVENTORY seed list hardcodes alias names created by setup's
  _install_alias_skill_md; both sites now carry mirrored keep-in-sync
  comments so a renamed alias can't silently strand its dir.

The skipped-entry report moves to the end of the run so cursor skips are
listed alongside the Claude ones.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(redact): env.kv stops flagging cacheKey-style names; prepush exclusion scoped to the push remote

Two calibration/coverage fixes in the redaction guard:

- env.kv's zero-or-more-prefix regex fired on ANY identifier ending in a
  credential suffix, so ordinary code (cacheKey:, sortKey:, partitionKey:,
  hotkey:, even monkey:) with an 8+-char entropic value hit a MEDIUM confirm
  prompt — a gate that cries wolf gets ignored. A name now only counts when
  its shape is credential-semantic: suffix separated by _/-/. (api_key,
  x-access-key, AUTH.TOKEN), a bare suffix (key:, token:), ALL-CAPS env style
  (APIKEY=, MY_APIKEY=), or a camel compound with a credential prefix
  (apiKey, authToken, clientSecret). The value stays capture group 1, so the
  shape check lives in validate (isCredentialShapedEnvName), not the regex.

- gstack-redact-prepush's narrowing excluded commits reachable from ANY
  remote (`--not --remotes`), so a secret that had only ever reached a
  private/local-path remote was never scanned when later pushed to a PUBLIC
  remote. The exclusion is now scoped to the push target
  (`--remotes=<name>/*`) via the remote name git hands pre-push as $1 (the
  installed wrapper already forwards "$@"); stdin/CLI invocations and URL
  pushes without a configured name fall back to the historical all-remotes
  behavior. #2592's catch-up-merge fix is unaffected: upstream commits come
  from the same remote being pushed to.

New coverage: env.kv negative controls (cacheKey/sortKey/partitionKey/
hotkey/monkey/idempotencyKey) + positive controls for all four name shapes;
end-to-end hook tests proving a second-remote secret blocks a push to origin
while origin-published catch-up content still doesn't, plus both fallbacks.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): honest probe budget, bounded daemon log, single refusal source, liveness + reinstall coverage

Five hardening items in the browse CLI and its tests:

- probeHealthWithBackoff's advertised ~8s budget could really run ~10s: the
  final 2s probe could start 1ms before the deadline, and every call site
  had JUST run a failed probe yet the loop re-probed immediately.
  Iterations now start with the sleep and each probe's timeout clamps to
  the remaining budget (isServerHealthy takes an injectable timeout).
- browse-daemon.log is append-mode across every respawn with no size cap,
  so a crash-respawn loop fills the disk. The path is now built in one
  place (daemonLogPath — the Unix fd path and the Windows launcher string
  had two spellings) and daemon start rotates a >10MB log to
  browse-daemon.log.1, single generation, matching the repo's 10MB
  rotation convention. Rotation is exported + injectable and behaviorally
  unit-tested.
- The two "healthy daemon already running" refusal blocks in connect had
  already drifted (one lost the tabs/cookies/logins explainer) — extracted
  refuseHeadedOverLiveDaemon as the single source.
- process-liveness: pinned the EPERM-means-alive contract (PID 1 on POSIX,
  PID 4 on Windows — signalable-or-EPERM, both alive). A probe that reads
  EPERM as dead is the false negative that leaked agents.
- runBoundedChromiumReinstall had zero coverage: now exercised end-to-end
  against a stub bunx on a prepended PATH — exit 0, install-exit-N with
  stderr tail, the detached group-kill timeout path (child of the child
  dies too), and spawn-error.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(hooks): timeline Stop hook reads a 256KB tail instead of the whole file

The Stop hook runs on EVERY Claude Code turn machine-wide and re-read +
JSON-parsed the entire timeline each time, scaling to the 10MB size cap
(~100-300ms per turn of pure overhead). It now reads only the last 256KB
via fstat + positioned read, discarding the first partial line when the
window starts mid-file.

Semantics: a dangling "started" older than the last 256KB of appends
belongs to a session long gone — beyond repair interest. The window can
never fabricate a dangling entry ("completed" is always appended AFTER its
"started", so any started inside the window has its completion inside the
window too), so idempotency holds. The fail-open contract is unchanged:
exit 0 always, size cap kept, deadline re-checked before the write.

New test: a >256KB timeline where a recent dangling entry still gets
repaired while an old out-of-window dangler is left alone; all existing
fail-open cases pass unchanged.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(setup): Windows runtime-asset copies prune nested gitignored build output

_link_skill_runtime_assets' exclusion list filters DIRECT children only, so
the Windows cp -R real-copy path swept NESTED gitignored build output into
the installed skill dirs — concretely, ios-qa/scripts/gen-accessors-tool/
.build is 252MB per install. The IS_WINDOWS real-copy branch now prunes
nested node_modules/.build/dist post-copy (find -prune -exec rm -rf).

Scoped to _link_skill_runtime_assets ONLY: the generic _link_or_copy stays
untouched because runtime roots (browse/, design/) intentionally copy their
dist/ binaries. On Unix the assets are symlinks into the working tree, and
the prune is gated on the real-copy shape so it can never delete build
output from the repo through a link — both directions pinned in
test/setup-windows-rerun-refresh.test.ts with fixture trees.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(upgrade): migrations see the real install dir; stash can no longer resurrect stale renders

Two ways the v1.67 render-dirt cleanup was inert in the wired upgrade flow:

- Both migration runners invoked `bash "$migration"` without
  GSTACK_INSTALL_DIR, so migrations that clean the INSTALL (v1.67.0.0.sh
  defaults to ~/.claude/skills/gstack when unset) silently no-oped for
  repo-local installs. setup now passes "$SOURCE_GSTACK_DIR" and the
  /gstack-upgrade Step 4.75 runner passes the detected "$INSTALL_DIR".
- /gstack-upgrade Step 4 ran `git stash` BEFORE reset+setup, so the tree
  was always clean by the time the migration ran, the legacy render dirt
  landed in stash@{0}, and Step 4's own note then told the user to
  `git stash pop` — restoring stale generated SKILL.md over the fresh
  checkout permanently. Step 4 now discards the render footprint
  (generated SKILL.md and sections/*.md modifications only, the same
  classification as migrations/v1.67.0.0.sh) BEFORE stashing, so the stash
  only ever carries real user changes; the stash-pop note says the render
  dirt was discarded and regenerates. The migration stays for manual
  git-pull flows.

Template change regenerated for all 3 hosts (claude tree checked in;
codex/factory trees are gitignored render outputs).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(browse): stop --force-restart kills the live daemon directly instead of booting a fresh one

`browse stop --force-restart` on a live-but-busy daemon fell through the
stop short-circuit into ensureServer(), whose force-restart path kills the
daemon and then STARTS A FRESH ONE (daemon + Chromium, multi-second churn)
just so sendCommand('stop') can shut it down again — the #2254 churn in
force clothing. gstack-upgrade's Step 4.8 sends users down exactly this
path when a stale daemon is busy after an upgrade.

The stop short-circuit now handles it: live pid + --force-restart → kill
the daemon (tree-kill on Windows, TERM→KILL on POSIX), reap the orphaned
Chromium + clear profile locks, remove the state file, exit 0 — no server
is ever started. Pinned in stop-dead-daemon.test.ts: a wedged live "daemon"
is killed, the state file stays gone (a booted daemon would have rewritten
it), and no Starting/Restarting output appears.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(hooks): timeline repair counts started vs completed per key instead of set-masking

The dangling-event repair kept only the FIRST "started" entry per
skill+session key and treated "completed" as a set, so any key where one
run completed and another dangles was never repaired — and keys are not
unique per run: legacy entries with no session field all share the
bare-skill key, and the preamble's "$$-epoch" session ids collide within
the same second. One old completion masked every future dangler forever.

The hook now counts started vs completed per key and appends completions
for the DIFFERENCE. Idempotency holds by construction: the appended
completions balance the counts, so the next Stop appends nothing. Pinned
with the two-runs-one-dangling case plus a re-run no-op assertion; all
existing fail-open cases pass unchanged.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(setup): Windows refresh bypass no longer deletes a user's own skill dirs

The #2444 IS_WINDOWS refresh bypass (link_codex/factory/opencode/cursor
_skill_dirs) rm -rf's the destination before re-copying — and the host
skills dirs are SHARED namespaces, so the gstack* glob can land on a
user's OWN real directory (e.g. ~/.cursor/skills/gstack-notes). Every
./setup re-run silently deleted it — the ownership guard the comments
still claimed (#2142). The sidecar installers had the same shape against
a hand-written skill squatting on the canonical .../skills/gstack root,
and create_cursor_runtime_root wiped that root unconditionally on every
platform.

Same provenance model as bin/gstack-uninstall (#2563):

- _owned_for_windows_refresh: a real dir is only replaced when its
  SKILL.md carries the AUTO-GENERATED banner; symlinks and missing
  targets always pass. Non-matching dirs are kept and listed to stderr.
  Wired into all four *_skill_dirs loops.
- _sidecar_root_user_owned: a root whose SKILL.md exists WITHOUT the
  banner is the user's — create_agents_sidecar, create_cursor_sidecar,
  and create_cursor_runtime_root skip it entirely instead of writing
  into (or wiping) someone else's skill. A root with no SKILL.md stays
  presumed ours (the documented install location; old/partial installs
  look like that).

Pinned by a static census (every bypass site must carry its gate) plus
behavior fixtures: a bannerless user dir survives the Windows re-run
while a bannered install still refreshes, and a squatted sidecar root is
left untouched.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(render): a failed brain-aware render can no longer vanish the installed skill set

Both render sites (setup's gbrain step and gstack-config gbrain-refresh)
ran `rm -rf` on the LIVE render dir BEFORE invoking gen:skill-docs:user.
Installed skills symlink into that dir (relink prefers it), so one
transient render failure — bun error, disk full, broken template — left
every brain-aware skill's SKILL.md symlink dangling: the whole skill set
vanished from Claude Code until a successful re-render.

Both sites now render into "$RENDER_DIR.tmp.$$" and swap it in only on
SUCCESS via a shared-contract _swap_in_render helper (mv old away, mv tmp
in, drop old — links into the live path stay valid because the path never
changes). The failure branch removes only the tmp dir and says so: the
previous render, and every link into it, stays fully intact. The
deliberate wipe on the gbrain-GONE path (stale render shadowing canonical
files) is unchanged.

Pinned in test/user-render-out-dir-install.test.ts: static shape (render
targets the TMP dir, never the live dir), _swap_in_render driven
behaviorally from BOTH files, and an end-to-end failure-branch fixture
proving a pre-existing render plus an installed symlink survive a failed
render.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test+docs: codex probe cache invalidation coverage, make-pdf --no-* structural pin, file the review-batch deferrals

- test/codex-model-probe.test.ts: the 1h TTL and the auth.json half of the
  mtime signature had no coverage — a regression in either would silently
  serve a stale MODEL_OK after re-login or forever. Added TTL-expiry
  (backdated cache line re-probes) and auth.json-mtime invalidation cases,
  mirroring the existing config.toml case.
- make-pdf/test/cli-args.test.ts: structural assertion derived from the
  commands.ts registry — every --no-* flag must be in BOOLEAN_FLAGS, so a
  new negation flag can't silently re-open #2514 (swallowing the next
  positional).
- TODOS.md: filed five review-batch deferrals under the v1.67 queue with
  rationale and effort: setup host-function dedup, cmd.exe %VAR% quoting in
  gbrainInvocation (cross-spawn direction), make-pdf flag registry metadata
  (derive BOOLEAN_FLAGS), legacy codex/factory/kiro uninstall provenance
  gating (parity with the cursor gate), and cursor auto-detect breadth
  (product call).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): package.json version check accepts the decision-11 npm translation

The bump wrote the npm-valid 3-digit manifest version for the first time
this release; the old assertion demanded byte-equality with the 4-digit
VERSION. Accept the translation plus the grandfathered pre-v1.67 mirror,
matching gstack-version-bump's own drift contract.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: sync project documentation with the v1.67.0.0 fix wave

Port range 10000-49151 + busy-vs-dead daemon semantics + XProtect launch
heal + browse-daemon.log in BROWSER.md/ARCHITECTURE.md; #2557 dead security
surface (shield, L4b Haiku, DeBERTa ensemble, canary injector) marked
removed in README/ARCHITECTURE per CLAUDE.md's do-not-redocument note;
runtime-asset installs + alias copies in CONTRIBUTING/CLAUDE.md; manual
uninstall fixed for asset-bearing dirs, alias copies, cursor/opencode
roots, and the timeline Stop hook; gbrain-refresh out-dir render path;
npm-valid package.json version translation documented in CLAUDE.md;
patches/ in the project tree; two CHANGELOG accuracy fixes (-272 net
lines, upgrade-time quarantine-clear) + release-summary em-dash polish.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(browse): findAvailablePort comment matches the 49151 range cap

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ci-image): the dependency layer carries patches/ — bun install needs the patch files the lock declares

bun.lock's patchedDependencies (playwright-core windowsHide) made
'bun install --frozen-lockfile' fail inside the image build: the Dockerfile
copied package.json + bun.lock but not patches/. The image-tag hash in all
three workflows (ci-image, evals, evals-periodic — kept in lockstep) now
includes patches/** so editing a patch rebuilds the layer instead of
serving a stale cache.

Verified: the exact COPY set (package.json + bun.lock + patches) installs
clean in a Linux container; without patches it reproduces the CI failure.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(codex-probe): cache signature uses GNU-first stat with numeric validation

On GNU stat, -f means FILESYSTEM mode — the BSD-first form emitted a
multi-line filesystem block on Linux, so the cache signature never matched
its own cache line and the model-probe cache missed on every read (each
preflight re-paid the probe). Same class and same fix as #2195: GNU -c %Y
first, BSD -f %m fallback, non-numeric residue coerced to 0.

Verified: the probe test file passes 7/7 under real GNU stat in a Linux
container (it failed 2/7 on Linux CI before).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): first cross-platform run of the wave's tests — Linux tmp portability + Windows-lane truthfulness

Four platform holes from the lanes' first full run over the v1.67 tests:

- uninstall neutral-root fallback hardcoded /private/tmp (macOS-only) and
  ENOENT'd on Linux CI, where the shard TMPDIR is the gstack-containing
  path that forces the fallback — now realpath'd literal /tmp.
- uninstall's kept-and-listed assertion demanded a backslash path on
  Windows while the bash uninstall prints POSIX paths — now
  separator-insensitive.
- setup-rerun's IS_WINDOWS=0 sub-case and the iron rule's force-restart
  consent path are Unix-shaped by construction (Git Bash ln -snf copies
  without Developer Mode; the consent path boots a real replacement daemon
  the browserless Windows lane cannot host) — gated off win32 with the
  reasons in place; the Windows-relevant halves still run there.
- codex-under-codex-detection drives rendered bash under a hardcoded POSIX
  PATH, so every case saw empty output on Windows — moved to
  KNOWN_WINDOWS_INCOMPATIBLE with the run receipt.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ci-image): stage patches/ into the narrow build context in all three workflows

The image builds from context .github/docker, into which a staging step
copies package.json + bun.lock — the previous fix added COPY patches to the
Dockerfile but not patches/ to that staging, so buildx failed computing the
COPY checksum ('/patches: not found'). All three workflows (ci-image, evals,
evals-periodic) stage identically, in lockstep with the shared tag hash.

Verified: a build over the exact staged context resolves both COPY layers.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
Co-authored-by: Stefan Andrei <89592870+sneakygriff@users.noreply.github.com>
Co-authored-by: Lucky Wenapere <luckydio10@gmail.com>
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2026-08-16 19:34:41 -07:00
3bef43bc5a v1.55.0.0 fix wave: gbrain data-loss guards + browser crash-loop + 6 more (#1808)
* fix(jsonl-merge): make equal-ts resolution converge across machines

The JSONL append merge driver sorted timestamped entries by (0, ts) with no
further tiebreaker. Equal-ts entries then fell back to stable-sort insertion
order (base, ours, theirs), but git assigns the local side to "ours", so two
machines resolving the same conflict emitted equal-ts lines in opposite order.
The merged files diverged and never converged. gstack-telemetry-log uses
second-granularity timestamps, so same-ts collisions are routine.

Add the line content as the final sort tiebreaker so the order is total and
side-independent. Add a regression test that runs the driver with the two
sides swapped and asserts identical output.

* fix(gen-skill-docs): quote frontmatter descriptions with interior colons (#1778)

Generated SKILL.md frontmatter emitted the catalog-trimmed description: as a
plain YAML scalar. A description with an interior ": " (e.g. "Ship workflow:
detect...") parses as a nested mapping under strict YAML loaders, so Codex/OpenAI
skill loading rejected those skills.

applyCatalogTrim now routes the value through toYamlInlineScalar, which quotes
(via JSON.stringify) only when a plain scalar would be invalid — interior ": ",
inline " #", leading indicator char, or surrounding whitespace. Strings that are
already valid plain scalars pass through unchanged to keep regen diffs small.

The frontmatter test now parses every generated block (Claude + Codex hosts) with
Bun.YAML.parse instead of string-checking that name:/description: substrings exist,
so the regression can't reappear. Runs under `bun test` (already in CI).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* chore(skills): regenerate SKILL.md after frontmatter quoting fix (#1778)

9 catalog-trimmed descriptions whose values contain an interior colon or inline-
comment marker are now quoted. Generated output only; rerun of bun run gen:skill-docs.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* refactor(gbrain-sources): centralize sources-list shape handling in parseSourcesList (#1576)

#1576's crash in sourceLocalPath was already fixed in v1.42.0.0 (dual-shape
handling). But the readers disagreed: sourceLocalPath accepted both the wrapped
{sources:[...]} object (v0.20+) and a bare array, while probeSource and
sourcePageCount accepted only the wrapped shape. Extract one parseSourcesList()
normalizer and route all three through it, so the shape assumption lives in a
single place. This is also the base the #1734 remote_url audit builds on.

parseSourcesList returns [] for null/garbage rather than throwing; callers treat
'no rows' as absent. New test/gbrain-sources-parse.test.ts pins both shapes plus
the garbage paths and confirms config.remote_url survives for the audit.

#1576 is closeable as already-fixed in v1.42.0.0.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(gbrain): spawn gbrain + brain-sync through a shell on Windows (#1731)

On Windows, bun/npm install gbrain as a gbrain.cmd/.ps1 shim and gstack-brain-sync
is a bash shebang script. spawnSync/spawn/execFileSync resolve neither without a
shell, so the child spawn failed ENOENT — on the sync orchestrator this surfaced
as 'brain-sync exited undefined' (#1731).

Add NEEDS_SHELL_ON_WINDOWS (process.platform === 'win32') in gbrain-exec and pass
it as shell: to every gbrain/brain-sync child spawn: spawnGbrain, spawnGbrainAsync,
execGbrainText (gbrain-exec), the two sources-list/remove/add spawns (gbrain-sources),
the version + probe spawns (gbrain-local-status), and the two brain-sync spawns in
the orchestrator. POSIX keeps the cheaper no-shell path.

macOS/Linux CI can't exercise the Windows path, so test/gbrain-spawn-windows-shell.ts
is a static-grep tripwire: it fails CI if a gbrain/brain-sync spawn is added without
the shell flag.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(catalog-trim): expect YAML-quoted descriptions with interior colons (#1778)

The quoting fix wraps colon-bearing catalog descriptions in double quotes;
two catalog-trim assertions still pinned the old unquoted form. Tolerate the
optional quotes.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(gbrain-sync): defensive guards against destructive gbrain ops (#1734)

The orchestrator shelled out to gbrain's destructive subcommands as if they were
safe. gbrain can rm-rf a user's working tree during an autopilot race (its own
bug, upstream gbrain #1526); gstack now defends itself. New lib/gbrain-guards.ts
gates the two destructive reach points, all checked immediately before the op:

- Autopilot refuse (multi-signal, affirmative-only): refuse a destructive op when
  a live 'gbrain autopilot' process (primary) or a known autopilot lock file
  (secondary; checked under both GBRAIN_HOME and ~/.gbrain since gbrain #1226
  ignores GBRAIN_HOME) is present. No signal → proceed; inability to introspect
  never bricks a normal sync.
- sources remove: routed through safeSourcesRemove → decideSourceRemove. Fail
  CLOSED — refuse to remove a user-managed source (remote_url set, local_path
  outside gbrain's clones) when gbrain has no --keep-storage to protect the files
  (it doesn't in 0.41.x). Also fail closed when the source list can't be read.
  Path containment uses realpath so a symlink can't smuggle a delete out of clones.
- sync --strategy code: decideCodeSync refuses URL-managed sources (remote_url
  set) unless --allow-reclone is passed, since the walk can auto-reclone (rm-rf).

Capability detection memoizes per process keyed to gbrain's identity (no stale
persistent cache); --keep-storage can't be probed (generic help) so it defaults
unsupported → fail closed. Every guard surfaces a visible reason; autopilot/reclone
refusals fail the code stage (verdict ERR) rather than silently skipping protection.

test/gbrain-guards.test.ts covers all branches hermetically (injected rows + probe
overrides): autopilot signals, fail-closed remove, keep-storage path, reclone gate,
realpath/symlink containment. Supersedes #1736 (which guarded a nonexistent path).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(sync-gbrain): warn against running during autopilot; prefer --path sources (#1734)

Adds a Safety note to the /sync-gbrain guidance (template + regenerated SKILL.md +
this repo's CLAUDE.md): don't run while autopilot is active, and prefer
`gbrain sources add --path` over URL-managed sources, which can auto-reclone.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(memory-ingest): configurable import timeout + resume-on-timeout messaging (#1611)

The gbrain import (the long pole on big brains) had a hardcoded 30-min timeout,
so large memory corpora got SIGTERM'd mid-import on /sync-gbrain --full. Make it
configurable via GSTACK_INGEST_TIMEOUT_MS (default 30 min, validated 1min–24h).

gstack can't drive gbrain's internal resume, but the existing SIGTERM forwarder
already preserves gbrain's import-checkpoint.json, so the next run resumes. On a
timeout we now say so explicitly ('checkpoint preserved — re-run /sync-gbrain to
resume, raise GSTACK_INGEST_TIMEOUT_MS for big brains') instead of surfacing a
bare 'exited null'. True gstack-driven ingest-resume is deferred to gbrain
(.context/gbrain-asks.md).

Also guards the module's main() behind import.meta.main so resolveImportTimeoutMs
is unit-testable; the orchestrator runs it as a subprocess where main still fires.
New test/memory-ingest-timeout.test.ts pins default/override/invalid resolution.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(browse): stop the headed daemon crash-loop + silent headless downgrade (#1781)

A headed session against a beacon-heavy page (analytics/extension load) could tip
the single-threaded daemon into a self-inflicted crash-loop: a brief HTTP stall
was read as a crash, the restart didn't clear the dead Chromium's SingletonLock,
the relaunch failed, and the session silently came back headless. Four fixes:

1. Busy-vs-dead (sendCommand): on a connection error, if the process is alive give
   /health a bounded probe (3x/250ms) and just retry the command — never kill+restart
   a live-but-busy server. A 30s timeout now reports 'busy, not restarting' when the
   process is alive instead of exiting into a kill cycle.
2. Profile-lock cleanup on (re)start: startServer reaps the orphaned Chromium holding
   the SingletonLock and clears Singleton{Lock,Socket,Cookie} before relaunch, so the
   auto-restart path gets the same clean profile the manual connect preamble did.
3. Headed persistence: the restart env reapplies BROWSE_HEADED from this invocation OR
   the persisted server state (mode==='headed'), so a restart from a plain command
   never downgrades a headed window to invisible headless. Extracted to buildRestartEnv.
4. Force-clean disconnect reaps the Chromium child tree (via the SingletonLock PID) so
   the next connect starts clean instead of fighting an orphan.

Plus macOS window surfacing: connect + focus raise 'Google Chrome for Testing' to the
active Space (best-effort osascript) with a Mission Control hint — the first thing
users read as 'I can't see the browser'.

Shared lock helpers (chromiumProfileDir / cleanChromiumProfileLocks / killOrphanChromium)
dedupe the connect, disconnect, and restart paths. browse/test/restart-env.test.ts pins
the headed-persistence decision; the full crash-loop repro is an E2E (periodic).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(gbrain-install): remove the v0.18.2 pin, install latest + version floor + doctor self-test (#1744)

The installer pinned gbrain at v0.18.2 while gbrain shipped v0.41.x — ~23 versions
behind. Remove the hard pin: a fresh clone now stays on the latest default-branch
HEAD. --pinned-commit <sha> still pins for reproducibility.

Unpinning removes the version gate the pin provided, so add two install-time gates
that fail closed (exit 3, matching the existing PATH-shadow/version-mismatch posture):
- MIN_GBRAIN_VERSION floor (0.20.0, the sources-list/federated surface gstack needs):
  refuse an install below it.
- gbrain doctor --fast self-test when a brain config already exists (re-install /
  detected clone): refuse to leave a broken gbrain in place. Pre-init installs skip
  it; the full /sync-gbrain --dry-run self-test runs from /setup-gbrain after init.

Docs updated (USING_GBRAIN_WITH_GSTACK.md no longer says 'edit PINNED_COMMIT').
Detect-install tests bump the success-path fixtures above the floor and add a
below-floor exit-3 test. The gbrain-side asks (root #1526 fix, --keep-storage,
remove-lease, capability command, ingest-resume, integration CI) are written to
.context/gbrain-asks.md for filing against garrytan/gbrain.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(#1778): update claude-ship golden + catalog-mode assertions for quoted descriptions

ship's catalog description ('Ship workflow: detect...') has an interior colon, so
the #1778 fix now YAML-quotes it. Refresh the claude-ship golden baseline to the
quoted output and make the catalog-mode-full trim/restore assertions quote-tolerant.
codex/factory ship goldens are unaffected (they use block-scalar descriptions).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(gen-skill-docs): use function replacer so a $ in a description can't corrupt frontmatter (#1778)

String.prototype.replace treats $&/$1/$` in the replacement as patterns. A future
skill description containing $ (e.g. referencing $B/$D) would silently corrupt the
generated frontmatter. Use a function replacer. Behavior-preserving for all current
descriptions (regen produces no diff).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* chore: bump version and changelog (v1.55.0.0)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(gbrain): document configurable memory-ingest timeout for v1.55.0.0

USING_GBRAIN_WITH_GSTACK.md: note GSTACK_INGEST_TIMEOUT_MS (default 30 min,
1 min-24h range) on the /sync-gbrain memory stage, plus checkpoint-resume on
timeout. Fills the reference gap left by the configurable-import-timeout fix
(#1611) shipped in v1.55.0.0.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Jayesh Betala <jayesh.betala7@gmail.com>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-05-30 14:57:07 -07:00
Garry TanandClaude Opus 4.7 65972f6a15 v1.43.1.0 feat: default PGLite to voyage-code-3 for code search + e2e tests (#1639)
* docs: drop ~/.zshrc env note in favor of GSTACK_* env-shim reference

The CLAUDE.md "Where the keys live on this machine" block hand-rolled a
`grep ~/.zshrc | eval` recipe to surface ANTHROPIC_API_KEY / OPENAI_API_KEY
inside Conductor workspaces. That predates the GSTACK_* env-shim
(`lib/conductor-env-shim.ts`, v1.39.2.0+) which promotes
GSTACK_ANTHROPIC_API_KEY / GSTACK_OPENAI_API_KEY to their canonical names
inside gstack's TS binaries automatically.

The zshrc recipe is now an obsolete workaround. Replace with a short note
pointing at the env-shim as the canonical answer. Keep the Agent SDK
\`env: {...}\` gotcha (still real, unrelated to where the key comes from).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: default PGLite to voyage-code-3 when VOYAGE_API_KEY set

When gstack inits a local PGLite engine for code search, use Voyage's
code-specialized `voyage-code-3` (1024-dim) embedding model if
\`VOYAGE_API_KEY\` is present. Falls back to gbrain's auto-selected
provider chain (OpenAI text-embedding-3-large 1536-dim when
OPENAI_API_KEY is available, etc.) when the Voyage key is unset.

Why voyage-code-3: head-to-head A/B against voyage-4-large on 10
realistic code queries against this codebase (using gbrain query
--no-expand for pure vector retrieval). voyage-code-3 strictly won on
4 queries (cases where the right hit was an implementation file vs a
test file: terminal-agent.ts over terminal-agent-integration.test.ts,
sanitizeReplacer over sanitize.test.ts, disposeSession over a
tangentially-related killDaemon test, surfaced injectCanary semantic
query). Tied on 5 with consistently +0.03 to +0.06 higher confidence.
Zero losses for voyage-4-large.

Touches 3 init sites in setup-gbrain/SKILL.md.tmpl:
- Step 1.5 (broken-db rollback-safe switch to PGLite)
- Path 3 direct PGLite init
- Step 4.5 split-engine local code index (Path 4 Yes branch)

Plus 2 manual-repair hints in sync-gbrain/SKILL.md.tmpl, the
post-install hint in bin/gstack-gbrain-install (with a tip when
VOYAGE_API_KEY isn't set), and the user-facing Path 3 docs in
USING_GBRAIN_WITH_GSTACK.md.

Cost is trivial: voyage-code-3 at \$0.18/1M tokens means a full reindex
of a 100K-LOC repo runs about \$0.20. Incremental syncs are pennies.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: regenerate SKILL.md after voyage-code-3 default

Mechanical regen via \`bun run gen:skill-docs --host all\` after the
template changes in the previous commit. Single-host regen leaves
other-host outputs stale and trips gen-skill-docs.test.ts; --host all
keeps every adapter (claude, codex, kiro, opencode, slate, cursor,
openclaw, hermes, gbrain) in sync.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test: gbrain PGLite + voyage-code-3 init contract + sync integration

Two test files cover the voyage-code-3 default landed in the previous
commits:

test/gbrain-init-voyage-code-3.test.ts — free, deterministic, gate-tier.
Mirrors gbrain-init-rollback.test.ts: runs the skill template's
PGLite-init bash against a fake \`gbrain\` that logs argv to a sentinel
file, asserts the right flags pass under VOYAGE_API_KEY set/unset/empty.
Also includes belt-and-suspenders grep checks that the template literally
contains the voyage gate at all 3 PGLite init sites.

test/gbrain-sync-voyage-code-3-integration.test.ts — real, paid,
skip-if-no-key. Inits a sandbox PGLite with voyage-code-3 in a tempdir,
registers a 3-file fixture git repo as a source, runs
\`gbrain sync --strategy code --skip-failed\`, asserts pages imported +
embedded > 0. Also asserts \`gbrain doctor\` reports no dimension
mismatch and the column width is 1024d. \`gbrain code-def\` smoke test
confirms symbol extraction works against the embedded fixture.

The integration test deliberately omits a \`gbrain query\` assertion:
query produces correct output but \`gbrain query\` hangs ~2 min on a
fresh PGLite before exiting. The smoking-gun assertion for "embeddings
worked" is the "N pages embedded" line from sync output. Symbol-aware
correctness is covered by the code-def assertion.

Caught one real bug during test development: gbrain reads
\`.gbrain-source\` from CWD and tries to sync that source too. The test
sets cwd to the sandbox root to avoid the parent worktree's pin
polluting the sandbox brain. Documented in the runGbrain() helper.

Runtime: ~22s when VOYAGE_API_KEY is set, instant skip otherwise.
Cost: ~\$0.001 per run (3 tiny fixture files, ~500 tokens of Voyage
embeddings).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: bump to v1.43.1.0 with voyage-code-3 default + tests

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: update USING_GBRAIN_WITH_GSTACK for v1.43.1.0 voyage-code-3 default

Add VOYAGE_API_KEY row to the env-var table; clarify the OPENAI_API_KEY row as
the fallback path. Refresh the "search returns nothing semantic" troubleshooting
to mention both providers and clarify that the env-shim only promotes
ANTHROPIC/OPENAI from GSTACK_ — VOYAGE_API_KEY must be set directly in Conductor
workspace env.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* docs: drop em-dashes + replace phantom embedding-migrations.md ref with inline recipe

CHANGELOG release-summary prose used em-dashes (violates voice rule) and
linked to docs/embedding-migrations.md which is gbrain's doc, not gstack's.
Replace with periods/commas and inline the dimension-mismatch recovery
recipe directly (mv + re-init).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-21 18:55:55 -07:00
026751ea20 v1.40.0.0 fix wave: gbrain sync hardening (8 community PRs + migration) (#1547)
* fix(gbrain-sync): fold hostname into code-source id hash + migration (#1414)

Cherry-picked from #1468 by 0xDevNinja and extended with the
hostname-fold migration that codex review surfaced.

Pre-fix `deriveCodeSourceId` hashed the absolute repo path alone, so two
machines with identical home-dir layouts (chezmoi-managed dotfiles,
ansible-provisioned VMs) derived the same id and clobbered each other's
`local_path` in a federated brain. Last-writer-wins, with cryptic "Not a
git repository" errors on the loser.

Hash key is now `\${hostname}::\${path}`. Conductor worktrees on a single
host stay distinct (path entropy unchanged within a host); cross-machine
federations stop colliding.

Migration (D1=B + codex refinements): every existing user has a
pre-#1468 path-only-hash source id in their brain that no longer matches
what `deriveCodeSourceId` produces. Without migration, the next sync
registers a fresh source and orphans the old one. This commit adds:

- \`derivePathOnlyHashLegacyId\` — separate helper for the pre-#1468 form.
  Distinct from \`deriveLegacyCodeSourceId\` (pre-pathhash v1.x form);
  both probes run.

- \`planHostnameFoldMigration\` — feature-checks \`gbrain sources rename
  <old> <new>\` (exact argument shape, not just \`--help\`), gates on
  path-drift (skip migration if old source's \`local_path\` differs from
  current repo root), and falls back to register-new + sync-OK +
  remove-old when rename is unsupported. As of gbrain 0.35.0.0 the
  rename subcommand does not exist, so users go through the cleanup
  path; the rename path stays dormant until gbrain ships it.

- \`removeOrphanedSource\` — called only AFTER new-source sync verifies
  page_count > 0. Closes the data-loss window codex flagged where
  "register new, remove old before sync" can wipe pages if sync fails.

- \`sourceLocalPath\` — looks up a source's \`local_path\` from
  \`gbrain sources list --json\` for the drift gate.

- Helpers accept an optional \`env\` parameter so tests can inject a
  gbrain shim via PATH without process-wide PATH mutation (Bun's
  spawnSync doesn't pick up runtime PATH changes). Pre-positions for
  commit 4's centralized gbrain-exec helper.

- \`if (import.meta.main)\` guard around \`main()\` so the helpers can be
  imported for in-process unit tests.

Tests cover: pure derivation, ids-match degenerate case, no-legacy
short-circuit, path-drift skip path, rename path with shim, cleanup
fallback when rename unsupported, cleanup fallback when rename call
itself fails, source-lookup happy/missing/error paths.

\`GSTACK_HOSTNAME\` env var is a test-only knob; production uses
\`os.hostname()\`.

Fixes #1414

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(gbrain-sync): cut source-id slugs on hyphen boundaries (+ #1357)

Cherry-picked from #1481 by drummerms and extended with the explicit
HTTPS-remote regression case for #1357 (decision D2=A).

`constrainSourceId` truncated the slug with `slug.slice(-tailBudget)`,
which cut mid-word when the boundary fell inside a token. For a repo
where the combined `prefix-org-repo-pathhash` exceeded 32 chars, this
produced embarrassing artifacts like `gstack-code-kill-270c0001-c32152`
(from `drummerms-av-sow-wiz-skill-270c0001`).

Two changes carried from #1481, adapted for the #1468 hostpathhash:

1. `constrainSourceId` now walks hyphen-separated tokens from the right,
   accumulating whole tokens until adding the next would exceed
   `tailBudget`. When no token fits, falls through to the existing
   `${prefix}-${hash}` form.

2. `deriveCodeSourceId` now retries with `repo-only-hostpathhash`
   (dropping the org segment) when the full `org-repo-hostpathhash`
   triggers truncation. Keeps the repo name readable when it fits at all.

Plus a new test asserting the source id is period-free for the exact
HTTPS-with-.git remote shape from #1357 (`https://github.com/foo/bar.git`).
canonicalizeRemote strips `.git`; the sanitizer strips any residual
non-alnum. The test closes #1357 by pinning the property.

Closes #1357

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(gbrain): probe CLI without command builtin

* fix(gbrain-sync): centralize gbrain spawn surface + seed DATABASE_URL

Cherry-picked from #1508 by jasshultz, restructured per codex review #4
and #7 to widen scope and centralize the spawn surface.

The bug: gbrain auto-loads .env.local from cwd via dotenv. When
/sync-gbrain runs inside a Next.js / Prisma / Rails project whose
.env.local defines its own DATABASE_URL (pointing at the app's local
DB), gbrain reads that value instead of its own
~/.gbrain/config.json — auth fails, code + memory stages crash.

This commit:

- Adds lib/gbrain-exec.ts: buildGbrainEnv, spawnGbrain, execGbrainJson,
  execGbrainText, spawnGbrainAsync (the last one for memory-ingest's
  streaming gbrain import call). buildGbrainEnv seeds DATABASE_URL from
  ${GBRAIN_HOME:-$HOME/.gbrain}/config.json, returns a fresh env object
  (never the caller's by identity — codex review #11), and honors the
  GSTACK_RESPECT_ENV_DATABASE_URL=1 escape hatch.

- Routes every gbrain spawn in bin/gstack-gbrain-sync.ts and
  bin/gstack-memory-ingest.ts through the helpers. Both files now own
  zero direct spawnSync("gbrain"|spawn("gbrain"|execFileSync("gbrain"
  call sites.

- Threads buildGbrainEnv into the spawnSync("bun", [memory-ingest], ...)
  grandchild in runMemoryIngest (codex review #7). Without this, the
  parent fix is half-baked — the bun child inherits a clean env but
  needs DATABASE_URL pre-seeded too. spawnGbrainAsync inside
  memory-ingest provides defense in depth for standalone invocations.

- Adds GBRAIN_HOME support — aligns with detectEngineTier (already
  honors GBRAIN_HOME) so all gstack-side gbrain calls agree on which
  config file matters. Resolves baseEnv.HOME first, then homedir(), so
  test injection works without process-wide HOME mutation.

- Adds test/build-gbrain-env.test.ts: 10 unit tests covering all five
  env-seeding branches (seed from config / override caller /
  GSTACK_RESPECT escape hatch / missing config / unparseable config /
  no database_url field / GBRAIN_HOME path / object-identity guard /
  unrelated-vars preservation / idempotent-when-matches).

- Adds test/gbrain-exec-invariant.test.ts: static-source check that
  greps both bin/gstack-gbrain-sync.ts and bin/gstack-memory-ingest.ts
  for direct spawnSync("gbrain"|spawn("gbrain"|execFileSync("gbrain"|
  execSync(...gbrain matches and fails the build if any are found.
  Refactor-proof against future contributors adding a new gbrain spawn
  without env threading.

The invariant is intentionally narrow — only the two files where the
DATABASE_URL bug actually hurts users are guarded. Migrating the
spawn sites in lib/gbrain-local-status.ts, lib/gstack-memory-helpers.ts,
and bin/gstack-brain-context-load.ts is a follow-up.

Co-Authored-By: Jason Shultz <jasshultz@gmail.com>
Co-Authored-By: Claude <noreply@anthropic.com>

* fix(gbrain-sync): add .gbrain-source to consumer repo .gitignore (#1384)

The v1.29.0.0 changelog promised .gbrain-source would be added to the
consuming repo's .gitignore so the per-worktree pin stays local, but the
change actually only added it to gstack's own .gitignore. Without the
consumer-side entry, the pin gets committed and Conductor sibling
worktrees of the same repo + branch step on each other's pin every time
anyone commits.

Add ensureGbrainSourceGitignored after a successful gbrain sources
attach in runCodeImport. Idempotent on repeat runs (line-trim match),
creates .gitignore if missing, logs a warning and continues on
permission errors so a read-only checkout doesn't fail the sync.

Gate the top-level main() call behind import.meta.main so tests can
import the helper without triggering a full sync run on module load.

Tests in test/gbrain-source-gitignore.test.ts cover: create-when-missing,
append-without-trailing-newline, append-with-trailing-newline,
idempotent on repeat, recognize whitespace-surrounded entry, no-throw
on read-only file. 6 pass.

* fix(gbrain-sources): bump gbrain sources list --json timeout 10s → 30s

Supabase free-tier cold-starts can push `gbrain sources list --json` past
10s (observed 14.5s in the wild), causing probeSource() to throw ETIMEDOUT
during /sync-gbrain code stage even though the underlying CLI was healthy.
Matches the 30s ceiling already used by `sources add` / `sources remove`
in the same file.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(brain-allowlist): sync project-root eng-review-test-plan artifacts (#1452)

Cherry-picked from #1465 by genisis0x and extended with the v1.40.0.0
upgrade migration that codex review #5 surfaced.

#1465 alone only patches bin/gstack-artifacts-init, which means fresh
installs and re-inits pick up the new pattern. But existing users who
already ran v1.38.1.0 have a `.migrations/v1.38.1.0.done` marker — that
migration won't re-run no matter what we change. So their installed
`.brain-allowlist`, `.brain-privacy-map.json`, and `.gitattributes` stay
without the new pattern, and `/plan-eng-review` artifacts continue to
silently drop out of their federation queue.

This commit:

- bin/gstack-artifacts-init: adds projects/*/*-eng-review-test-plan-*.md
  to the three managed blocks. v1.38.1.0 covered design + test-plan; this
  completes the set for /plan-eng-review.

- gstack-upgrade/migrations/v1.40.0.0.sh: targeted in-place repair for
  existing installs. Same idempotent jq-based shape as v1.38.1.0. Adds
  the new pattern to .brain-allowlist (before the USER ADDITIONS marker),
  .brain-privacy-map.json (as class=artifact), and .gitattributes (as
  merge=union). NEVER commits + pushes — the user controls when the
  patches ship to their federated artifacts repo.

- test/artifacts-init-migration.test.ts: 5 new tests covering the
  v1.40.0.0 migration applied on top of a post-v1.38.1.0 state, jq
  patching, gitattributes append, idempotent re-run, and done-marker
  write when files are missing entirely.

Co-Authored-By: Claude <noreply@anthropic.com>

* fix(gbrain-install): skip postinstall on Windows MSYS/MINGW + post-install probe

Cherry-picked from #1487 by genisis0x and extended with the post-install
subcommand probe per T6 / codex review #19.

`bun install` in $INSTALL_DIR fails on Windows MSYS/MINGW/Cygwin shells
because gbrain's native postinstall script mis-parses path arguments
and aborts with a non-zero exit, breaking gstack-gbrain-install for
Windows users running git-bash/MSYS2. The package installs cleanly
without scripts.

This commit:

- Adds Windows shell detection via `uname -s` matching
  MINGW*/MSYS*/CYGWIN*/Windows_NT (#1487's case statement already covers
  all four — codex review #18 confirmed MINGW* is included). Windows
  paths get `bun install --ignore-scripts`; macOS and Linux unchanged.

- Adds a post-install probe of `gbrain sources --help`. `gbrain --version`
  already runs (D19 PATH-shadowing validation), but version success
  doesn't prove the subcommand surface is reachable — and
  `--ignore-scripts` may have skipped artifacts that subcommands need.
  Probe failure logs a clear warning (with Windows-specific remediation
  pointing at re-running `bun install` outside MSYS) but does NOT exit
  non-zero; users may still get value from gbrain even if the probe
  fails transiently.

Refs #1271

Co-Authored-By: Claude <noreply@anthropic.com>

* chore: v1.40.0.0 — gbrain sync hardening wave

Bumps VERSION 1.39.2.0 → 1.40.0.0 (MINOR — substantial gbrain capability
hardening across sync pipeline, install path, federation allowlist;
~600 net LOC added across 8 community PRs + plan-review refinements).

CHANGELOG entry follows the release-summary format: two-line headline,
lead paragraph, "numbers that matter" with before/after table across 8
user-visible surfaces, "what this means for builders" closer, itemized
Added/Changed/Fixed/NOT fixed/For contributors sections.

Per-commit contributor credits: 0xDevNinja, drummerms, Jayesh Betala,
Jason Shultz, genisis0x. Also names NikhileshNanduri and realcarsonterry
in the wave's "Fixed" section for independent submissions of the
.gbrain-source gitignore bug.

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: 0xDevNinja <manmit0x@gmail.com>
Co-authored-by: Claude <noreply@anthropic.com>
Co-authored-by: drummerms <mike@av2o.com>
Co-authored-by: Jayesh Betala <jayesh.betala7@gmail.com>
Co-authored-by: Jason Shultz <jasshultz@gmail.com>
Co-authored-by: genisis0x <manietdavv@gmail.com>
2026-05-17 08:26:36 -07:00
Garry TanandClaude Opus 4.7 6209163900 v1.12.2.0 fix: /setup-gbrain day-two fixes (MCP scope, version parse, gh repo create order, smoke test) (#1187)
* fix: parse gbrain --version without "gbrain" prefix

Installer's D19 PATH-shadow check compared `expected_version` from
package.json against `actual_version` from `gbrain --version`. The
output is "gbrain 0.18.2" with a literal prefix; `tr -d '[:space:]'`
left "gbrain0.18.2" which never matched "0.18.2", causing every
fresh install to exit 3 with a false-positive shadowing error.

Use `awk '{print $NF}'` to grab just the last whitespace-separated
token before stripping whitespace.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(brain-init): drop --source flag before git init

gstack-brain-init used `gh repo create --source $GSTACK_HOME` before
running `git init` on that directory. gh requires --source to point at
an existing git repo, so the call fails with "not a git repository"
on first run. The fallback path (gh repo view) could only recover if
the repo was somehow pre-created — which it wasn't.

Fix: omit --source from `gh repo create`. The script's later steps
(git init, remote add, push) wire up the remote explicitly.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(setup-gbrain): smoke test command + MCP user scope with absolute path

Three Step 5a/9 defects found running /setup-gbrain end-to-end:

1. Step 9 smoke test used `gbrain put_page --title ... --tags ...`,
   which doesn't exist. The real command is `gbrain put <slug>` with
   body piped on stdin. Updated to match.

2. Step 5a registered MCP with `claude mcp add gbrain -- gbrain serve`.
   Default scope is local (per-workspace), so other projects never saw
   gbrain. Cross-session memory is the whole point — user scope is
   correct.

3. Step 5a passed `gbrain` by bare name, relying on PATH being resolved
   when Claude Code spawns the subprocess. Fragile across shell configs.
   Use absolute path from `command -v gbrain` with ~/.bun/bin/gbrain
   fallback.

Also: remove any stale local-scope registration before re-adding, and
tell the user that open Claude Code sessions need a restart to see
the new mcp__gbrain__* tools (loaded at session start, not mid-session).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: bump version and changelog (v1.12.1.0)

Also updates test/gstack-brain-init-gh-mock.test.ts to match the fixed
behavior of bin/gstack-brain-init (the assertion previously required
`--source`, which was the bug being fixed in 04185d8f).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: tighten CHANGELOG entry for v1.12.1.0

Shorter, matter-of-fact list of the fixes. No preamble.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-24 07:51:46 -07:00
Garry TanandClaude Opus 4.7 2014557e7f v1.12.0.0 feat: /setup-gbrain — coding-agent onboarding for gbrain (#1183)
* feat(setup-gbrain): add gstack-gbrain-repo-policy bin helper

Per-remote trust-tier store for the forthcoming /setup-gbrain skill.
Tiers are the D3 triad (read-write / read-only / deny), keyed by a
normalized remote URL so ssh-shorthand and https variants collapse to
the same entry. The file carries _schema_version: 2 (D2-eng); legacy
`allow` values from pre-D3 experiments auto-migrate to `read-write`
on first read, idempotent, with a one-shot log line.

Pure bash + jq to match the existing gstack-brain-* family. Atomic
writes via tmpfile + rename. Policy file mode 0600. Corrupt files
quarantine to .corrupt-<ts> and start fresh.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(setup-gbrain): unit tests for gstack-gbrain-repo-policy

24 tests covering normalize (ssh/https/shorthand/uppercase collapse to
one key), set/get round-trip, all three D3 tiers accepted, invalid
tiers rejected, file mode 0600, _schema_version field written on fresh
files, legacy allow migration (including idempotence and preservation
of non-allow entries), corrupt-JSON quarantine + fresh-file recovery,
list output sorting, and get-without-arg auto-detect against a git
repo with no origin.

All tests green against a per-test tmpdir GSTACK_HOME so nothing
leaks into the real ~/.gstack.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(setup-gbrain): add gstack-gbrain-detect state reporter

Pure-introspection JSON emitter for the /setup-gbrain skill's
start-up branching. Reports: gbrain presence + version on PATH,
~/.gbrain/config.json existence + engine, `gbrain doctor --json`
health (wrapped in timeout 5s to match the /health D6 pattern),
gstack-brain-sync mode via gstack-config, and ~/.gstack/.git
presence for the memory-sync feature.

Never modifies state. Always emits valid JSON even when every check
is false. Handles malformed ~/.gbrain/config.json without crashing
— gbrain_engine is null in that case, not an error.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(setup-gbrain): add gstack-gbrain-install with D5 detect-first + D19 PATH-shadow guard

Clones gbrain at a pinned commit (v0.18.2) and registers it via
`bun link`. Before any clone:

  D5 detect-first — probes ~/git/gbrain, ~/gbrain, and the install
  target for a valid pre-existing clone (package.json with name
  "gbrain" and bin.gbrain set). If one is found, `bun link` runs
  there instead of cloning a second copy. Prevents the day-one
  duplicate-install footgun on the skill author's own machine.

After install:

  D19 PATH-shadow guard — reads the install-dir's package.json
  version, compares to `gbrain --version` on PATH. On mismatch:
  exits 3, prints every gbrain binary on PATH via `type -a`, and
  gives a remediation menu. Setup skills refuse broken environments
  instead of warning and continuing.

Prereq checks (bun, git, https://github.com reachability) fail fast
with install hints. --dry-run and --validate-only flags let the
skill probe the plan without touching state; tests use them to
cover D5 and D19 without exercising real bun link.

Pin is a load-bearing version: setup-gbrain v1 verified against
gbrain v0.18.2. Updating requires re-running Pre-Impl Gate 1 to
verify gbrain's CLI + config shapes haven't drifted.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(setup-gbrain): unit tests for gstack-gbrain-detect + install

15 tests covering: detect emits valid JSON when nothing configured,
reports gstack_brain_git on GSTACK_HOME/.git presence, reads
~/.gbrain/config.json engine, tolerates malformed config, detects
a mocked gbrain binary on PATH with version parsing.

For install: D5 detect-first uses ~/git/gbrain fixtures under a
sandboxed HOME, verifies fall-through to fresh clone when no valid
clone exists, rejects invalid package.json shapes. D19 PATH-shadow
validation uses a fake gbrain on a minimal SAFE_PATH to simulate
version mismatch, same-version-pass, v-prefix tolerance, missing
binary on PATH, and missing version field in package.json.

--validate-only mode in the install bin makes the D19 check unit-
testable without running real bun link (which touches ~/.bun/bin).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(setup-gbrain): add gstack-gbrain-lib.sh with read_secret_to_env (D3-eng)

Shared secret-read helper for PAT (D11) and pooler URL paste (D16).
One implementation of the hardest-to-get-right pattern: stty -echo +
SIGINT/TERM/EXIT trap that restores terminal mode, read into a named
env var, optional redacted preview.

Validates the target var name against [A-Z_][A-Z0-9_]* to prevent
bash name-injection via `read -r "$varname"`. When stdin is not a TTY
(CI, piped tests) the stty branches skip cleanly — piped input doesn't
echo anyway. Exports the var after read so subprocesses inherit it;
callers own the `unset` at handoff time.

Sourced, not executed — no +x bit.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(setup-gbrain): add gstack-gbrain-supabase-verify structural URL check

Zero-network validator for Supabase Session Pooler URLs before handing
them to `gbrain init`. Canonical shape verified per gbrain init.ts:266:
  postgresql://postgres.<ref>:<password>@aws-0-<region>.pooler.supabase.com:6543/postgres

Rejects direct-connection URLs (db.*.supabase.co:5432) with a distinct
exit code 3 and clear IPv6-failure remediation — that's the most common
paste mistake users make, so it earns its own UX path rather than a
generic "bad URL" error.

Never echoes the URL (contains a password) in error messages; tests
verify a distinct seed password never appears in stderr on any reject
path. Accepts URL from argv[1] or stdin ("-" or no arg).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(setup-gbrain): unit tests for supabase-verify + lib.sh secret helper

22 tests. verify: accepts canonical pooler URL (argv + stdin modes),
rejects direct-connection URL with exit 3, rejects wrong scheme, wrong
port, empty password, missing userinfo, plain 'postgres' user (catches
direct-URL paste errors), wrong host, empty URL. Case-insensitive host
match. Explicit negative: error messages never echo the URL password.

lib.sh read_secret_to_env: reads piped stdin into the named env var,
exports to subprocesses, redacted-preview emits masked form on stderr
with the seed password absent, rejects invalid var names (lowercase,
leading digit, hyphens), rejects missing/unknown flags, secret value
never appears on stdout.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(setup-gbrain): add gstack-gbrain-supabase-provision Management API wrapper

Four subcommands: list-orgs, create, wait, pooler-url. Built against
the verified Supabase Management API shape (Pre-Impl Gate 1):

  - POST /v1/projects with {name, db_pass, organization_slug, region}
    — not the original plan's /v1/organizations/{ref}/projects
  - No `plan` field; subscription tier is org-level per the OpenAPI
    description ("Subscription Plan is now set on organization level
    and is ignored in this request")
  - GET /v1/projects/{ref}/config/database/pooler for pooler config
    — not /config/database

Secrets discipline: SUPABASE_ACCESS_TOKEN (PAT) and DB_PASS read from
env only, never from argv (D8 grep test enforces this). `set +x` at
the top as a defensive default so debug tracing never leaks secrets.
Management API hostname hardcoded to SUPABASE_API_BASE env override —
no user-controlled URL portion (SSRF guard).

HTTP error paths: 401/403 → exit 3 (auth), 402 → 4 (quota), 409 → 5
(conflict), 429 + 5xx → exponential-backoff retry up to 3 attempts,
then exit 8. Wait subcommand polls every 5s until ACTIVE_HEALTHY
with a configurable timeout; terminal states (INIT_FAILED, REMOVED,
etc.) exit 7 immediately with a clear message. Timeout emits the
--resume-provision hint so the skill can recover.

Pooler-url constructs the URL locally from db_user/host/port/name +
DB_PASS rather than trusting the API response's connection_string
field, which is templated with [PASSWORD] rather than the real value.
Handles both object and array response shapes, preferring session
pool_mode when Supabase returns multiple pooler configs.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(setup-gbrain): unit tests for gstack-gbrain-supabase-provision via mock API

22 tests covering D21 HTTP error suite (401/403/402/409/429/5xx) and
happy paths for all four subcommands. Every test spins up a Bun.serve
mock server bound to SUPABASE_API_BASE so nothing hits the real API.

Uses Bun.spawn (async) rather than spawnSync because spawnSync blocks
the Bun event loop, which prevents Bun.serve mocks from responding —
calls would hit curl's own timeout instead of round-tripping.

Verifies: POST body contains organization_slug (not organization_id)
and no `plan` field, bearer-token auth header, retry-on-429 with
eventual success, exit-8 on persistent 5xx after max retries, wait
succeeds on ACTIVE_HEALTHY, exits 7 on INIT_FAILED, exits 6 with
--resume-provision hint on timeout, pooler-url builds URL locally
from db_user/host/port/name + DB_PASS (not response connection_string
template), handles array pooler responses.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(setup-gbrain): add SKILL.md.tmpl — user-facing skill prompt

Stitches together every slice built so far (repo-policy, detect,
install, lib.sh secret helper, supabase-verify, supabase-provision)
into a single interactive flow. Paths: Supabase existing-URL, Supabase
auto-provision (D7), Supabase manual, PGLite local, switch (PGLite ↔
Supabase via gbrain migrate wrapped in timeout 180s per D9).

Secrets discipline per D8/D10/D11: PAT + DB_PASS + pooler URL all
read via read_secret_to_env from lib.sh and handed to gbrain via
GBRAIN_DATABASE_URL env, never argv. PAT carries the full D11 scope
disclosure before collection and an explicit revocation reminder after
success. D12 SIGINT recovery prints the in-flight ref + resume command.

D18 MCP registration is scoped honestly to Claude Code — skips with
a manual-register hint when `claude` is not on PATH. D6 per-remote
trust-triad question (read-write/read-only/deny/skip-for-now) gates
repo import; the triad values compose with the D2-eng schema-version
policy file so future migrations stay deterministic.

Skill runs concurrent-run-locked via mkdir ~/.gstack/.setup-gbrain.lock.d
(atomic, same pattern as gstack-brain-sync). Telemetry (D4) payload
carries enumerated categorical values only — never URL, PAT, or any
postgresql:// substring.

--repo, --switch, --resume-provision, --cleanup-orphans shortcut modes
documented inline; the skill parses its own invocation args.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(health): integrate gbrain as D6 composite dimension

Adds a GBrain row to the /health dashboard rubric with weight 10%.
Three sub-signals rolled into one 0-10 score: doctor status (0.5),
sync queue depth (0.3), last-push age (0.2). Redistributes when
gbrain_sync_mode is off so the dimension stays fair.

Weights rebalance: typecheck 25→22, lint 20→18, test 30→28,
deadcode 15→13, shell 10→9, gbrain +10 — sums to 100.

gbrain doctor --json wrapped in timeout 5s so a hung gbrain never
stalls the /health dashboard. Dimension is omitted (not red) when
gbrain is not installed — running /health on a non-gbrain machine
shouldn't penalize that choice.

History-JSONL adds a `gbrain` field. Pre-D6 entries read as null for
trend comparison; new tracking starts from first post-D6 run.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(test): add secret-sink-harness for negative-space leak testing (D21 #5)

Runs a subprocess with a seeded secret, captures every channel the
subprocess could leak through, and asserts the seed never appears.
Built per the D1-eng tightened contract: per-run tmp $HOME, four seed
match rules (exact + URL-decoded + first-12-char prefix + base64),
fd-level stdout/stderr capture via Bun.spawn, post-mortem walk of
every file written under $HOME, separate buckets for telemetry JSONL.

Reusable: any future skill that handles secrets can import
runWithSecretSink and run positive/negative controls against its own
bins. The harness itself is ~180 lines of TS with no external deps
beyond Bun + node:fs.

Out of scope for v1 (documented as follow-ups): subprocess env dump
(portable /proc reading), the user's real shell history (bins don't
modify it).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test: secret-sink harness positive controls + real-bin negative controls

11 tests. Positive controls deliberately leak a seed in every covered
channel (stdout, stderr, a file under $HOME, the telemetry JSONL path,
base64-encoded, first-12-char prefix) and assert the harness catches
each one. Without these, a harness that silently under-reports would
look identical to a harness that works.

Negative controls run real setup-gbrain bins with distinctive seeds:
  - supabase-verify rejects a mysql:// URL and a direct-connection URL,
    password never appears in any captured channel
  - lib.sh read_secret_to_env reads piped stdin, emits only the length,
    seed value stays invisible
  - supabase-provision on an auth-failure path fails fast without
    leaking the PAT to any channel

Covers D21 #5 leak harness + uses it to validate D3-eng, D10, D11
discipline end-to-end on the already-shipped bins.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(setup-gbrain): add list-orphans + delete-project subcommands (D20)

Powers /setup-gbrain --cleanup-orphans. list-orphans filters the
authenticated user's Supabase projects by name prefix (default
"gbrain") and excludes the project the local ~/.gbrain/config.json
currently points at, so only unclaimed gbrain-shaped projects come
back. Active-ref detection parses the pooler URL's user portion
(postgres.<ref>:<pw>@...).

delete-project is a thin DELETE /v1/projects/{ref} wrapper with no
confirmation of its own — the skill's UI layer owns the per-project
confirm AskUserQuestion loop. Keeps responsibilities clean: the bin
manages HTTP; the skill manages user intent.

Both subcommands reuse the existing api_call retry+backoff and the
same PAT discipline (env only, never argv).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(setup-gbrain): list-orphans active-ref filtering + delete-project 404

6 new tests bringing the supabase-provision suite to 28:

list-orphans:
  - Filters to gbrain-prefixed projects, excludes the active-ref derived
    from ~/.gbrain/config.json's pooler URL
  - Treats all gbrain-prefixed projects as orphans when no config exists
    (first run on a new machine)
  - Respects custom --name-prefix for users who named their brain
    something else

delete-project:
  - Happy path sends DELETE /v1/projects/<ref> and returns {deleted_ref}
  - 404 surfaces cleanly (exit 2, "404" in stderr)
  - Missing <ref> positional rejected with exit 2

Uses per-test tmpdir HOME with a stubbed ~/.gbrain/config.json so
active-ref extraction runs against deterministic fixtures.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: regenerate setup-gbrain SKILL.md after main merge

* chore: bump version and changelog (v1.12.0.0)

Ships /setup-gbrain and its supporting infrastructure end-to-end:
per-remote trust policy, installer with PATH-shadow guard, shared
secret-read helper, structural URL verifier, Supabase Management
API wrapper, /health GBrain dimension, secret-sink test harness.

100 new tests across 5 suites, all green. Three pre-existing test
failures noted as P0 in TODOS.md.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: add USING_GBRAIN_WITH_GSTACK.md + update README for /setup-gbrain

README changes:
- Rewrote the "Cross-machine memory with GBrain sync" section into
  "GBrain — persistent knowledge for your coding agent." Covers the
  three /setup-gbrain paths (Supabase existing URL, auto-provision,
  PGLite local), MCP registration, per-remote trust triad, and the
  (still-separate) memory sync feature.
- Added /setup-gbrain row to the skills table pointing at the full guide.
- Added /setup-gbrain to both skill-list install snippets.
- Added USING_GBRAIN_WITH_GSTACK.md to the Docs table.

New doc (USING_GBRAIN_WITH_GSTACK.md):
- All three setup paths with trust-surface caveats
- MCP registration details (and honest Claude-Code-v1 scoping)
- Per-remote trust triad semantics + how to change a policy
- Switching engines (PGLite ↔ Supabase) via --switch
- GStack memory sync + its relationship to the gbrain knowledge base
- /setup-gbrain --cleanup-orphans for orphan Supabase projects
- Full command + flag reference, every bin helper, every env var
- Security model: what's enforced in code, what's enforced by the leak
  harness, and the honest limits of v1
- Troubleshooting: PATH shadowing, direct-connection URL reject,
  auto-provision timeout, stale lock, policy file hand-edits,
  migrate hang
- Why-this-design section explaining the non-obvious choices

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(brain-sync): secret scanner now catches Bearer-prefixed auth tokens in JSON

The bearer-token-json regex value charset was [A-Za-z0-9_./+=-]{16,},
which does NOT permit spaces. Real HTTP auth headers embed the scheme
name with a literal space — "Bearer <token>" — so the value portion
actually starts with "Bearer " and the existing regex couldn't match.
Result: any JSON blob containing "authorization":"Bearer ..." would
slip past the scanner and sync to the user's private brain repo with
the bearer token inline.

Added optional (Bearer |Basic |Token )? prefix in front of the value
charset. Now matches the common auth-scheme forms without broadening
the matcher to tolerate arbitrary whitespace (which would false-positive
on lots of benign JSON).

Verified against 5 positive cases (bearer-in-json, clean bearer, apikey
no-prefix, token with Bearer, password no-prefix) + 3 negative cases
(too-short tokens, non-secret field names like username, random JSON).

This closes the P0 security regression first noticed during v1.12.0.0
/ship. brain-sync.test.ts now passes all 7 secret-scan fixtures.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test: mock-gh integration tests for gstack-brain-init auto-create path

8 tests covering the gh-repo-create happy path that had zero coverage
before. Existing brain-sync.test.ts always passes --remote <bare-url>
to bypass gh entirely, so the interactive default ("press Enter, we'll
run gh repo create for you") was shipping on trust.

Test strategy: write a bash stub for gh that records every call into
a file, then run gstack-brain-init with that stub on PATH. Assertions
verify: gh auth status is checked, gh repo create fires with the
computed gstack-brain-<user> default name + --private + --source
flags, fall-through to gh repo view when create reports already-exists,
user-provided URL bypasses gh entirely, gh-not-on-path and gh-not-authed
branches both prompt for URL, --remote flag short-circuits all gh
calls, conflicting-remote re-runs exit 1 with a clear message.

No real GitHub, no live auth. Gate tier — runs on every commit.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(e2e): privacy-gate AskUserQuestion fires from preamble (periodic tier)

Two periodic-tier E2E tests exercising the preamble's privacy gate
end-to-end via the Agent SDK + canUseTool. Previously uncovered:

- Positive: stages a fake gbrain on PATH + gbrain_sync_mode_prompted=false
  in config, runs a real skill, intercepts tool-use. Asserts the
  preamble fires a 3-option AskUserQuestion matching the canonical
  prose ("publish session memory" / "artifact" / "decline") and does
  NOT fire a second time in the same run (idempotency within session).

- Negative: same staging but prompted=true. Asserts the gate stays
  silent even with gbrain detected on the host.

Registered in test/helpers/touchfiles.ts as `brain-privacy-gate`
(periodic) with dependency tracking on generate-brain-sync-block.ts,
the three gstack-brain-* bins, gstack-config, and the Agent SDK runner.
Diff-based selection re-runs the E2E when any of those change.

Cost: ~$0.30-$0.50 per run. Only fires under EVALS=1 EVALS_TIER=periodic;
gate tier stays free.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: update TODOS for bearer-json fix + new brain-sync test coverage

Moves the bearer-json secret-scan regression from the P0 "pre-existing
failures" block into the Completed section with full context on the
fix, the mock-gh tests, the E2E privacy-gate tests, and the touchfile
registration. Remaining P0s are the GSTACK_HOME config-isolation bug
and the stale Opus 4.7 overlay pacing assertion, both unrelated.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(test): E2E privacy gate — ambient env + skill-file prompt

Two fixes to get the E2E actually running end-to-end (first attempt
failed at the SDK auth step, second at the assertion step):

1. Don't pass an explicit `env:` object to runAgentSdkTest. The SDK's
   auth pipeline misses ANTHROPIC_API_KEY when env is supplied as an
   object (verified against the plan-mode-no-op test, which passes no
   env and auths cleanly). Mutate process.env before the call instead,
   and restore the originals in finally so other tests don't inherit
   the ambient mutation.

2. The "Run /learn with no arguments" user prompt was too narrow — the
   model reduced it to a direct action and skipped the preamble
   privacy-gate directives entirely, so zero AskUserQuestions fired.
   Mirror the plan-mode-no-op pattern: point the model at the skill
   file on disk and ask it to follow every preamble directive. Bumped
   maxTurns from 6 to 10 to give the preamble room to execute.

Verified both tests pass under `EVALS=1 EVALS_TIER=periodic bun test
test/skill-e2e-brain-privacy-gate.test.ts` against a real ANTHROPIC_API_KEY.
Cost per run: ~$0.30-$0.50 per test.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(CLAUDE.md): source ANTHROPIC/OPENAI keys from ~/.zshrc for paid evals

Conductor workspaces don't inherit the interactive shell env, so
both API keys are absent from the default process env even though
they're set in ~/.zshrc. Documents the source-from-zshrc pattern
(grep + eval, never echo the value) plus the Agent SDK gotcha: do
NOT pass env as an object to runAgentSdkTest — mutate process.env
ambiently and restore in finally.

Discovered this during the brain-privacy-gate E2E. First run failed
at SDK auth with 401; second failed because explicit env handoff
bypassed the SDK's own auth routing. Fix pattern now codified so
the next paid-eval session in a Conductor workspace doesn't hit the
same two dead ends.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-24 01:38:21 -07:00