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4 Commits
| Author | SHA1 | Message | Date | |
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 Garry Tan
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65972f6a15 |
v1.43.1.0 feat: default PGLite to voyage-code-3 for code search + e2e tests (#1639)
* docs: drop ~/.zshrc env note in favor of GSTACK_* env-shim reference
The CLAUDE.md "Where the keys live on this machine" block hand-rolled a
`grep ~/.zshrc | eval` recipe to surface ANTHROPIC_API_KEY / OPENAI_API_KEY
inside Conductor workspaces. That predates the GSTACK_* env-shim
(`lib/conductor-env-shim.ts`, v1.39.2.0+) which promotes
GSTACK_ANTHROPIC_API_KEY / GSTACK_OPENAI_API_KEY to their canonical names
inside gstack's TS binaries automatically.
The zshrc recipe is now an obsolete workaround. Replace with a short note
pointing at the env-shim as the canonical answer. Keep the Agent SDK
\`env: {...}\` gotcha (still real, unrelated to where the key comes from).
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* feat: default PGLite to voyage-code-3 when VOYAGE_API_KEY set
When gstack inits a local PGLite engine for code search, use Voyage's
code-specialized `voyage-code-3` (1024-dim) embedding model if
\`VOYAGE_API_KEY\` is present. Falls back to gbrain's auto-selected
provider chain (OpenAI text-embedding-3-large 1536-dim when
OPENAI_API_KEY is available, etc.) when the Voyage key is unset.
Why voyage-code-3: head-to-head A/B against voyage-4-large on 10
realistic code queries against this codebase (using gbrain query
--no-expand for pure vector retrieval). voyage-code-3 strictly won on
4 queries (cases where the right hit was an implementation file vs a
test file: terminal-agent.ts over terminal-agent-integration.test.ts,
sanitizeReplacer over sanitize.test.ts, disposeSession over a
tangentially-related killDaemon test, surfaced injectCanary semantic
query). Tied on 5 with consistently +0.03 to +0.06 higher confidence.
Zero losses for voyage-4-large.
Touches 3 init sites in setup-gbrain/SKILL.md.tmpl:
- Step 1.5 (broken-db rollback-safe switch to PGLite)
- Path 3 direct PGLite init
- Step 4.5 split-engine local code index (Path 4 Yes branch)
Plus 2 manual-repair hints in sync-gbrain/SKILL.md.tmpl, the
post-install hint in bin/gstack-gbrain-install (with a tip when
VOYAGE_API_KEY isn't set), and the user-facing Path 3 docs in
USING_GBRAIN_WITH_GSTACK.md.
Cost is trivial: voyage-code-3 at \$0.18/1M tokens means a full reindex
of a 100K-LOC repo runs about \$0.20. Incremental syncs are pennies.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* chore: regenerate SKILL.md after voyage-code-3 default
Mechanical regen via \`bun run gen:skill-docs --host all\` after the
template changes in the previous commit. Single-host regen leaves
other-host outputs stale and trips gen-skill-docs.test.ts; --host all
keeps every adapter (claude, codex, kiro, opencode, slate, cursor,
openclaw, hermes, gbrain) in sync.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* test: gbrain PGLite + voyage-code-3 init contract + sync integration
Two test files cover the voyage-code-3 default landed in the previous
commits:
test/gbrain-init-voyage-code-3.test.ts — free, deterministic, gate-tier.
Mirrors gbrain-init-rollback.test.ts: runs the skill template's
PGLite-init bash against a fake \`gbrain\` that logs argv to a sentinel
file, asserts the right flags pass under VOYAGE_API_KEY set/unset/empty.
Also includes belt-and-suspenders grep checks that the template literally
contains the voyage gate at all 3 PGLite init sites.
test/gbrain-sync-voyage-code-3-integration.test.ts — real, paid,
skip-if-no-key. Inits a sandbox PGLite with voyage-code-3 in a tempdir,
registers a 3-file fixture git repo as a source, runs
\`gbrain sync --strategy code --skip-failed\`, asserts pages imported +
embedded > 0. Also asserts \`gbrain doctor\` reports no dimension
mismatch and the column width is 1024d. \`gbrain code-def\` smoke test
confirms symbol extraction works against the embedded fixture.
The integration test deliberately omits a \`gbrain query\` assertion:
query produces correct output but \`gbrain query\` hangs ~2 min on a
fresh PGLite before exiting. The smoking-gun assertion for "embeddings
worked" is the "N pages embedded" line from sync output. Symbol-aware
correctness is covered by the code-def assertion.
Caught one real bug during test development: gbrain reads
\`.gbrain-source\` from CWD and tries to sync that source too. The test
sets cwd to the sandbox root to avoid the parent worktree's pin
polluting the sandbox brain. Documented in the runGbrain() helper.
Runtime: ~22s when VOYAGE_API_KEY is set, instant skip otherwise.
Cost: ~\$0.001 per run (3 tiny fixture files, ~500 tokens of Voyage
embeddings).
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* chore: bump to v1.43.1.0 with voyage-code-3 default + tests
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* docs: update USING_GBRAIN_WITH_GSTACK for v1.43.1.0 voyage-code-3 default
Add VOYAGE_API_KEY row to the env-var table; clarify the OPENAI_API_KEY row as
the fallback path. Refresh the "search returns nothing semantic" troubleshooting
to mention both providers and clarify that the env-shim only promotes
ANTHROPIC/OPENAI from GSTACK_ — VOYAGE_API_KEY must be set directly in Conductor
workspace env.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
* docs: drop em-dashes + replace phantom embedding-migrations.md ref with inline recipe
CHANGELOG release-summary prose used em-dashes (violates voice rule) and
linked to docs/embedding-migrations.md which is gbrain's doc, not gstack's.
Replace with periods/commas and inline the dimension-mismatch recovery
recipe directly (mv + re-init).
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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Garry Tan
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026751ea20 |
v1.40.0.0 fix wave: gbrain sync hardening (8 community PRs + migration) (#1547)
* fix(gbrain-sync): fold hostname into code-source id hash + migration (#1414) Cherry-picked from #1468 by 0xDevNinja and extended with the hostname-fold migration that codex review surfaced. Pre-fix `deriveCodeSourceId` hashed the absolute repo path alone, so two machines with identical home-dir layouts (chezmoi-managed dotfiles, ansible-provisioned VMs) derived the same id and clobbered each other's `local_path` in a federated brain. Last-writer-wins, with cryptic "Not a git repository" errors on the loser. Hash key is now `\${hostname}::\${path}`. Conductor worktrees on a single host stay distinct (path entropy unchanged within a host); cross-machine federations stop colliding. Migration (D1=B + codex refinements): every existing user has a pre-#1468 path-only-hash source id in their brain that no longer matches what `deriveCodeSourceId` produces. Without migration, the next sync registers a fresh source and orphans the old one. This commit adds: - \`derivePathOnlyHashLegacyId\` — separate helper for the pre-#1468 form. Distinct from \`deriveLegacyCodeSourceId\` (pre-pathhash v1.x form); both probes run. - \`planHostnameFoldMigration\` — feature-checks \`gbrain sources rename <old> <new>\` (exact argument shape, not just \`--help\`), gates on path-drift (skip migration if old source's \`local_path\` differs from current repo root), and falls back to register-new + sync-OK + remove-old when rename is unsupported. As of gbrain 0.35.0.0 the rename subcommand does not exist, so users go through the cleanup path; the rename path stays dormant until gbrain ships it. - \`removeOrphanedSource\` — called only AFTER new-source sync verifies page_count > 0. Closes the data-loss window codex flagged where "register new, remove old before sync" can wipe pages if sync fails. - \`sourceLocalPath\` — looks up a source's \`local_path\` from \`gbrain sources list --json\` for the drift gate. - Helpers accept an optional \`env\` parameter so tests can inject a gbrain shim via PATH without process-wide PATH mutation (Bun's spawnSync doesn't pick up runtime PATH changes). Pre-positions for commit 4's centralized gbrain-exec helper. - \`if (import.meta.main)\` guard around \`main()\` so the helpers can be imported for in-process unit tests. Tests cover: pure derivation, ids-match degenerate case, no-legacy short-circuit, path-drift skip path, rename path with shim, cleanup fallback when rename unsupported, cleanup fallback when rename call itself fails, source-lookup happy/missing/error paths. \`GSTACK_HOSTNAME\` env var is a test-only knob; production uses \`os.hostname()\`. Fixes #1414 Co-Authored-By: Claude <noreply@anthropic.com> * fix(gbrain-sync): cut source-id slugs on hyphen boundaries (+ #1357) Cherry-picked from #1481 by drummerms and extended with the explicit HTTPS-remote regression case for #1357 (decision D2=A). `constrainSourceId` truncated the slug with `slug.slice(-tailBudget)`, which cut mid-word when the boundary fell inside a token. For a repo where the combined `prefix-org-repo-pathhash` exceeded 32 chars, this produced embarrassing artifacts like `gstack-code-kill-270c0001-c32152` (from `drummerms-av-sow-wiz-skill-270c0001`). Two changes carried from #1481, adapted for the #1468 hostpathhash: 1. `constrainSourceId` now walks hyphen-separated tokens from the right, accumulating whole tokens until adding the next would exceed `tailBudget`. When no token fits, falls through to the existing `${prefix}-${hash}` form. 2. `deriveCodeSourceId` now retries with `repo-only-hostpathhash` (dropping the org segment) when the full `org-repo-hostpathhash` triggers truncation. Keeps the repo name readable when it fits at all. Plus a new test asserting the source id is period-free for the exact HTTPS-with-.git remote shape from #1357 (`https://github.com/foo/bar.git`). canonicalizeRemote strips `.git`; the sanitizer strips any residual non-alnum. The test closes #1357 by pinning the property. Closes #1357 Co-Authored-By: Claude <noreply@anthropic.com> * fix(gbrain): probe CLI without command builtin * fix(gbrain-sync): centralize gbrain spawn surface + seed DATABASE_URL Cherry-picked from #1508 by jasshultz, restructured per codex review #4 and #7 to widen scope and centralize the spawn surface. The bug: gbrain auto-loads .env.local from cwd via dotenv. When /sync-gbrain runs inside a Next.js / Prisma / Rails project whose .env.local defines its own DATABASE_URL (pointing at the app's local DB), gbrain reads that value instead of its own ~/.gbrain/config.json — auth fails, code + memory stages crash. This commit: - Adds lib/gbrain-exec.ts: buildGbrainEnv, spawnGbrain, execGbrainJson, execGbrainText, spawnGbrainAsync (the last one for memory-ingest's streaming gbrain import call). buildGbrainEnv seeds DATABASE_URL from ${GBRAIN_HOME:-$HOME/.gbrain}/config.json, returns a fresh env object (never the caller's by identity — codex review #11), and honors the GSTACK_RESPECT_ENV_DATABASE_URL=1 escape hatch. - Routes every gbrain spawn in bin/gstack-gbrain-sync.ts and bin/gstack-memory-ingest.ts through the helpers. Both files now own zero direct spawnSync("gbrain"|spawn("gbrain"|execFileSync("gbrain" call sites. - Threads buildGbrainEnv into the spawnSync("bun", [memory-ingest], ...) grandchild in runMemoryIngest (codex review #7). Without this, the parent fix is half-baked — the bun child inherits a clean env but needs DATABASE_URL pre-seeded too. spawnGbrainAsync inside memory-ingest provides defense in depth for standalone invocations. - Adds GBRAIN_HOME support — aligns with detectEngineTier (already honors GBRAIN_HOME) so all gstack-side gbrain calls agree on which config file matters. Resolves baseEnv.HOME first, then homedir(), so test injection works without process-wide HOME mutation. - Adds test/build-gbrain-env.test.ts: 10 unit tests covering all five env-seeding branches (seed from config / override caller / GSTACK_RESPECT escape hatch / missing config / unparseable config / no database_url field / GBRAIN_HOME path / object-identity guard / unrelated-vars preservation / idempotent-when-matches). - Adds test/gbrain-exec-invariant.test.ts: static-source check that greps both bin/gstack-gbrain-sync.ts and bin/gstack-memory-ingest.ts for direct spawnSync("gbrain"|spawn("gbrain"|execFileSync("gbrain"| execSync(...gbrain matches and fails the build if any are found. Refactor-proof against future contributors adding a new gbrain spawn without env threading. The invariant is intentionally narrow — only the two files where the DATABASE_URL bug actually hurts users are guarded. Migrating the spawn sites in lib/gbrain-local-status.ts, lib/gstack-memory-helpers.ts, and bin/gstack-brain-context-load.ts is a follow-up. Co-Authored-By: Jason Shultz <jasshultz@gmail.com> Co-Authored-By: Claude <noreply@anthropic.com> * fix(gbrain-sync): add .gbrain-source to consumer repo .gitignore (#1384) The v1.29.0.0 changelog promised .gbrain-source would be added to the consuming repo's .gitignore so the per-worktree pin stays local, but the change actually only added it to gstack's own .gitignore. Without the consumer-side entry, the pin gets committed and Conductor sibling worktrees of the same repo + branch step on each other's pin every time anyone commits. Add ensureGbrainSourceGitignored after a successful gbrain sources attach in runCodeImport. Idempotent on repeat runs (line-trim match), creates .gitignore if missing, logs a warning and continues on permission errors so a read-only checkout doesn't fail the sync. Gate the top-level main() call behind import.meta.main so tests can import the helper without triggering a full sync run on module load. Tests in test/gbrain-source-gitignore.test.ts cover: create-when-missing, append-without-trailing-newline, append-with-trailing-newline, idempotent on repeat, recognize whitespace-surrounded entry, no-throw on read-only file. 6 pass. * fix(gbrain-sources): bump gbrain sources list --json timeout 10s → 30s Supabase free-tier cold-starts can push `gbrain sources list --json` past 10s (observed 14.5s in the wild), causing probeSource() to throw ETIMEDOUT during /sync-gbrain code stage even though the underlying CLI was healthy. Matches the 30s ceiling already used by `sources add` / `sources remove` in the same file. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * fix(brain-allowlist): sync project-root eng-review-test-plan artifacts (#1452) Cherry-picked from #1465 by genisis0x and extended with the v1.40.0.0 upgrade migration that codex review #5 surfaced. #1465 alone only patches bin/gstack-artifacts-init, which means fresh installs and re-inits pick up the new pattern. But existing users who already ran v1.38.1.0 have a `.migrations/v1.38.1.0.done` marker — that migration won't re-run no matter what we change. So their installed `.brain-allowlist`, `.brain-privacy-map.json`, and `.gitattributes` stay without the new pattern, and `/plan-eng-review` artifacts continue to silently drop out of their federation queue. This commit: - bin/gstack-artifacts-init: adds projects/*/*-eng-review-test-plan-*.md to the three managed blocks. v1.38.1.0 covered design + test-plan; this completes the set for /plan-eng-review. - gstack-upgrade/migrations/v1.40.0.0.sh: targeted in-place repair for existing installs. Same idempotent jq-based shape as v1.38.1.0. Adds the new pattern to .brain-allowlist (before the USER ADDITIONS marker), .brain-privacy-map.json (as class=artifact), and .gitattributes (as merge=union). NEVER commits + pushes — the user controls when the patches ship to their federated artifacts repo. - test/artifacts-init-migration.test.ts: 5 new tests covering the v1.40.0.0 migration applied on top of a post-v1.38.1.0 state, jq patching, gitattributes append, idempotent re-run, and done-marker write when files are missing entirely. Co-Authored-By: Claude <noreply@anthropic.com> * fix(gbrain-install): skip postinstall on Windows MSYS/MINGW + post-install probe Cherry-picked from #1487 by genisis0x and extended with the post-install subcommand probe per T6 / codex review #19. `bun install` in $INSTALL_DIR fails on Windows MSYS/MINGW/Cygwin shells because gbrain's native postinstall script mis-parses path arguments and aborts with a non-zero exit, breaking gstack-gbrain-install for Windows users running git-bash/MSYS2. The package installs cleanly without scripts. This commit: - Adds Windows shell detection via `uname -s` matching MINGW*/MSYS*/CYGWIN*/Windows_NT (#1487's case statement already covers all four — codex review #18 confirmed MINGW* is included). Windows paths get `bun install --ignore-scripts`; macOS and Linux unchanged. - Adds a post-install probe of `gbrain sources --help`. `gbrain --version` already runs (D19 PATH-shadowing validation), but version success doesn't prove the subcommand surface is reachable — and `--ignore-scripts` may have skipped artifacts that subcommands need. Probe failure logs a clear warning (with Windows-specific remediation pointing at re-running `bun install` outside MSYS) but does NOT exit non-zero; users may still get value from gbrain even if the probe fails transiently. Refs #1271 Co-Authored-By: Claude <noreply@anthropic.com> * chore: v1.40.0.0 — gbrain sync hardening wave Bumps VERSION 1.39.2.0 → 1.40.0.0 (MINOR — substantial gbrain capability hardening across sync pipeline, install path, federation allowlist; ~600 net LOC added across 8 community PRs + plan-review refinements). CHANGELOG entry follows the release-summary format: two-line headline, lead paragraph, "numbers that matter" with before/after table across 8 user-visible surfaces, "what this means for builders" closer, itemized Added/Changed/Fixed/NOT fixed/For contributors sections. Per-commit contributor credits: 0xDevNinja, drummerms, Jayesh Betala, Jason Shultz, genisis0x. Also names NikhileshNanduri and realcarsonterry in the wave's "Fixed" section for independent submissions of the .gbrain-source gitignore bug. Co-Authored-By: Claude <noreply@anthropic.com> --------- Co-authored-by: 0xDevNinja <manmit0x@gmail.com> Co-authored-by: Claude <noreply@anthropic.com> Co-authored-by: drummerms <mike@av2o.com> Co-authored-by: Jayesh Betala <jayesh.betala7@gmail.com> Co-authored-by: Jason Shultz <jasshultz@gmail.com> Co-authored-by: genisis0x <manietdavv@gmail.com> |
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Garry Tan
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6209163900 |
v1.12.2.0 fix: /setup-gbrain day-two fixes (MCP scope, version parse, gh repo create order, smoke test) (#1187)
* fix: parse gbrain --version without "gbrain" prefix
Installer's D19 PATH-shadow check compared `expected_version` from
package.json against `actual_version` from `gbrain --version`. The
output is "gbrain 0.18.2" with a literal prefix; `tr -d '[:space:]'`
left "gbrain0.18.2" which never matched "0.18.2", causing every
fresh install to exit 3 with a false-positive shadowing error.
Use `awk '{print $NF}'` to grab just the last whitespace-separated
token before stripping whitespace.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix(brain-init): drop --source flag before git init
gstack-brain-init used `gh repo create --source $GSTACK_HOME` before
running `git init` on that directory. gh requires --source to point at
an existing git repo, so the call fails with "not a git repository"
on first run. The fallback path (gh repo view) could only recover if
the repo was somehow pre-created — which it wasn't.
Fix: omit --source from `gh repo create`. The script's later steps
(git init, remote add, push) wire up the remote explicitly.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* fix(setup-gbrain): smoke test command + MCP user scope with absolute path
Three Step 5a/9 defects found running /setup-gbrain end-to-end:
1. Step 9 smoke test used `gbrain put_page --title ... --tags ...`,
which doesn't exist. The real command is `gbrain put <slug>` with
body piped on stdin. Updated to match.
2. Step 5a registered MCP with `claude mcp add gbrain -- gbrain serve`.
Default scope is local (per-workspace), so other projects never saw
gbrain. Cross-session memory is the whole point — user scope is
correct.
3. Step 5a passed `gbrain` by bare name, relying on PATH being resolved
when Claude Code spawns the subprocess. Fragile across shell configs.
Use absolute path from `command -v gbrain` with ~/.bun/bin/gbrain
fallback.
Also: remove any stale local-scope registration before re-adding, and
tell the user that open Claude Code sessions need a restart to see
the new mcp__gbrain__* tools (loaded at session start, not mid-session).
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* chore: bump version and changelog (v1.12.1.0)
Also updates test/gstack-brain-init-gh-mock.test.ts to match the fixed
behavior of bin/gstack-brain-init (the assertion previously required
`--source`, which was the bug being fixed in
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Garry Tan
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2014557e7f |
v1.12.0.0 feat: /setup-gbrain — coding-agent onboarding for gbrain (#1183)
* feat(setup-gbrain): add gstack-gbrain-repo-policy bin helper Per-remote trust-tier store for the forthcoming /setup-gbrain skill. Tiers are the D3 triad (read-write / read-only / deny), keyed by a normalized remote URL so ssh-shorthand and https variants collapse to the same entry. The file carries _schema_version: 2 (D2-eng); legacy `allow` values from pre-D3 experiments auto-migrate to `read-write` on first read, idempotent, with a one-shot log line. Pure bash + jq to match the existing gstack-brain-* family. Atomic writes via tmpfile + rename. Policy file mode 0600. Corrupt files quarantine to .corrupt-<ts> and start fresh. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * test(setup-gbrain): unit tests for gstack-gbrain-repo-policy 24 tests covering normalize (ssh/https/shorthand/uppercase collapse to one key), set/get round-trip, all three D3 tiers accepted, invalid tiers rejected, file mode 0600, _schema_version field written on fresh files, legacy allow migration (including idempotence and preservation of non-allow entries), corrupt-JSON quarantine + fresh-file recovery, list output sorting, and get-without-arg auto-detect against a git repo with no origin. All tests green against a per-test tmpdir GSTACK_HOME so nothing leaks into the real ~/.gstack. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat(setup-gbrain): add gstack-gbrain-detect state reporter Pure-introspection JSON emitter for the /setup-gbrain skill's start-up branching. Reports: gbrain presence + version on PATH, ~/.gbrain/config.json existence + engine, `gbrain doctor --json` health (wrapped in timeout 5s to match the /health D6 pattern), gstack-brain-sync mode via gstack-config, and ~/.gstack/.git presence for the memory-sync feature. Never modifies state. Always emits valid JSON even when every check is false. Handles malformed ~/.gbrain/config.json without crashing — gbrain_engine is null in that case, not an error. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat(setup-gbrain): add gstack-gbrain-install with D5 detect-first + D19 PATH-shadow guard Clones gbrain at a pinned commit (v0.18.2) and registers it via `bun link`. Before any clone: D5 detect-first — probes ~/git/gbrain, ~/gbrain, and the install target for a valid pre-existing clone (package.json with name "gbrain" and bin.gbrain set). If one is found, `bun link` runs there instead of cloning a second copy. Prevents the day-one duplicate-install footgun on the skill author's own machine. After install: D19 PATH-shadow guard — reads the install-dir's package.json version, compares to `gbrain --version` on PATH. On mismatch: exits 3, prints every gbrain binary on PATH via `type -a`, and gives a remediation menu. Setup skills refuse broken environments instead of warning and continuing. Prereq checks (bun, git, https://github.com reachability) fail fast with install hints. --dry-run and --validate-only flags let the skill probe the plan without touching state; tests use them to cover D5 and D19 without exercising real bun link. Pin is a load-bearing version: setup-gbrain v1 verified against gbrain v0.18.2. Updating requires re-running Pre-Impl Gate 1 to verify gbrain's CLI + config shapes haven't drifted. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * test(setup-gbrain): unit tests for gstack-gbrain-detect + install 15 tests covering: detect emits valid JSON when nothing configured, reports gstack_brain_git on GSTACK_HOME/.git presence, reads ~/.gbrain/config.json engine, tolerates malformed config, detects a mocked gbrain binary on PATH with version parsing. For install: D5 detect-first uses ~/git/gbrain fixtures under a sandboxed HOME, verifies fall-through to fresh clone when no valid clone exists, rejects invalid package.json shapes. D19 PATH-shadow validation uses a fake gbrain on a minimal SAFE_PATH to simulate version mismatch, same-version-pass, v-prefix tolerance, missing binary on PATH, and missing version field in package.json. --validate-only mode in the install bin makes the D19 check unit- testable without running real bun link (which touches ~/.bun/bin). Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat(setup-gbrain): add gstack-gbrain-lib.sh with read_secret_to_env (D3-eng) Shared secret-read helper for PAT (D11) and pooler URL paste (D16). One implementation of the hardest-to-get-right pattern: stty -echo + SIGINT/TERM/EXIT trap that restores terminal mode, read into a named env var, optional redacted preview. Validates the target var name against [A-Z_][A-Z0-9_]* to prevent bash name-injection via `read -r "$varname"`. When stdin is not a TTY (CI, piped tests) the stty branches skip cleanly — piped input doesn't echo anyway. Exports the var after read so subprocesses inherit it; callers own the `unset` at handoff time. Sourced, not executed — no +x bit. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat(setup-gbrain): add gstack-gbrain-supabase-verify structural URL check Zero-network validator for Supabase Session Pooler URLs before handing them to `gbrain init`. Canonical shape verified per gbrain init.ts:266: postgresql://postgres.<ref>:<password>@aws-0-<region>.pooler.supabase.com:6543/postgres Rejects direct-connection URLs (db.*.supabase.co:5432) with a distinct exit code 3 and clear IPv6-failure remediation — that's the most common paste mistake users make, so it earns its own UX path rather than a generic "bad URL" error. Never echoes the URL (contains a password) in error messages; tests verify a distinct seed password never appears in stderr on any reject path. Accepts URL from argv[1] or stdin ("-" or no arg). Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * test(setup-gbrain): unit tests for supabase-verify + lib.sh secret helper 22 tests. verify: accepts canonical pooler URL (argv + stdin modes), rejects direct-connection URL with exit 3, rejects wrong scheme, wrong port, empty password, missing userinfo, plain 'postgres' user (catches direct-URL paste errors), wrong host, empty URL. Case-insensitive host match. Explicit negative: error messages never echo the URL password. lib.sh read_secret_to_env: reads piped stdin into the named env var, exports to subprocesses, redacted-preview emits masked form on stderr with the seed password absent, rejects invalid var names (lowercase, leading digit, hyphens), rejects missing/unknown flags, secret value never appears on stdout. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat(setup-gbrain): add gstack-gbrain-supabase-provision Management API wrapper Four subcommands: list-orgs, create, wait, pooler-url. Built against the verified Supabase Management API shape (Pre-Impl Gate 1): - POST /v1/projects with {name, db_pass, organization_slug, region} — not the original plan's /v1/organizations/{ref}/projects - No `plan` field; subscription tier is org-level per the OpenAPI description ("Subscription Plan is now set on organization level and is ignored in this request") - GET /v1/projects/{ref}/config/database/pooler for pooler config — not /config/database Secrets discipline: SUPABASE_ACCESS_TOKEN (PAT) and DB_PASS read from env only, never from argv (D8 grep test enforces this). `set +x` at the top as a defensive default so debug tracing never leaks secrets. Management API hostname hardcoded to SUPABASE_API_BASE env override — no user-controlled URL portion (SSRF guard). HTTP error paths: 401/403 → exit 3 (auth), 402 → 4 (quota), 409 → 5 (conflict), 429 + 5xx → exponential-backoff retry up to 3 attempts, then exit 8. Wait subcommand polls every 5s until ACTIVE_HEALTHY with a configurable timeout; terminal states (INIT_FAILED, REMOVED, etc.) exit 7 immediately with a clear message. Timeout emits the --resume-provision hint so the skill can recover. Pooler-url constructs the URL locally from db_user/host/port/name + DB_PASS rather than trusting the API response's connection_string field, which is templated with [PASSWORD] rather than the real value. Handles both object and array response shapes, preferring session pool_mode when Supabase returns multiple pooler configs. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * test(setup-gbrain): unit tests for gstack-gbrain-supabase-provision via mock API 22 tests covering D21 HTTP error suite (401/403/402/409/429/5xx) and happy paths for all four subcommands. Every test spins up a Bun.serve mock server bound to SUPABASE_API_BASE so nothing hits the real API. Uses Bun.spawn (async) rather than spawnSync because spawnSync blocks the Bun event loop, which prevents Bun.serve mocks from responding — calls would hit curl's own timeout instead of round-tripping. Verifies: POST body contains organization_slug (not organization_id) and no `plan` field, bearer-token auth header, retry-on-429 with eventual success, exit-8 on persistent 5xx after max retries, wait succeeds on ACTIVE_HEALTHY, exits 7 on INIT_FAILED, exits 6 with --resume-provision hint on timeout, pooler-url builds URL locally from db_user/host/port/name + DB_PASS (not response connection_string template), handles array pooler responses. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat(setup-gbrain): add SKILL.md.tmpl — user-facing skill prompt Stitches together every slice built so far (repo-policy, detect, install, lib.sh secret helper, supabase-verify, supabase-provision) into a single interactive flow. Paths: Supabase existing-URL, Supabase auto-provision (D7), Supabase manual, PGLite local, switch (PGLite ↔ Supabase via gbrain migrate wrapped in timeout 180s per D9). Secrets discipline per D8/D10/D11: PAT + DB_PASS + pooler URL all read via read_secret_to_env from lib.sh and handed to gbrain via GBRAIN_DATABASE_URL env, never argv. PAT carries the full D11 scope disclosure before collection and an explicit revocation reminder after success. D12 SIGINT recovery prints the in-flight ref + resume command. D18 MCP registration is scoped honestly to Claude Code — skips with a manual-register hint when `claude` is not on PATH. D6 per-remote trust-triad question (read-write/read-only/deny/skip-for-now) gates repo import; the triad values compose with the D2-eng schema-version policy file so future migrations stay deterministic. Skill runs concurrent-run-locked via mkdir ~/.gstack/.setup-gbrain.lock.d (atomic, same pattern as gstack-brain-sync). Telemetry (D4) payload carries enumerated categorical values only — never URL, PAT, or any postgresql:// substring. --repo, --switch, --resume-provision, --cleanup-orphans shortcut modes documented inline; the skill parses its own invocation args. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat(health): integrate gbrain as D6 composite dimension Adds a GBrain row to the /health dashboard rubric with weight 10%. Three sub-signals rolled into one 0-10 score: doctor status (0.5), sync queue depth (0.3), last-push age (0.2). Redistributes when gbrain_sync_mode is off so the dimension stays fair. Weights rebalance: typecheck 25→22, lint 20→18, test 30→28, deadcode 15→13, shell 10→9, gbrain +10 — sums to 100. gbrain doctor --json wrapped in timeout 5s so a hung gbrain never stalls the /health dashboard. Dimension is omitted (not red) when gbrain is not installed — running /health on a non-gbrain machine shouldn't penalize that choice. History-JSONL adds a `gbrain` field. Pre-D6 entries read as null for trend comparison; new tracking starts from first post-D6 run. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat(test): add secret-sink-harness for negative-space leak testing (D21 #5) Runs a subprocess with a seeded secret, captures every channel the subprocess could leak through, and asserts the seed never appears. Built per the D1-eng tightened contract: per-run tmp $HOME, four seed match rules (exact + URL-decoded + first-12-char prefix + base64), fd-level stdout/stderr capture via Bun.spawn, post-mortem walk of every file written under $HOME, separate buckets for telemetry JSONL. Reusable: any future skill that handles secrets can import runWithSecretSink and run positive/negative controls against its own bins. The harness itself is ~180 lines of TS with no external deps beyond Bun + node:fs. Out of scope for v1 (documented as follow-ups): subprocess env dump (portable /proc reading), the user's real shell history (bins don't modify it). Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * test: secret-sink harness positive controls + real-bin negative controls 11 tests. Positive controls deliberately leak a seed in every covered channel (stdout, stderr, a file under $HOME, the telemetry JSONL path, base64-encoded, first-12-char prefix) and assert the harness catches each one. Without these, a harness that silently under-reports would look identical to a harness that works. Negative controls run real setup-gbrain bins with distinctive seeds: - supabase-verify rejects a mysql:// URL and a direct-connection URL, password never appears in any captured channel - lib.sh read_secret_to_env reads piped stdin, emits only the length, seed value stays invisible - supabase-provision on an auth-failure path fails fast without leaking the PAT to any channel Covers D21 #5 leak harness + uses it to validate D3-eng, D10, D11 discipline end-to-end on the already-shipped bins. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat(setup-gbrain): add list-orphans + delete-project subcommands (D20) Powers /setup-gbrain --cleanup-orphans. list-orphans filters the authenticated user's Supabase projects by name prefix (default "gbrain") and excludes the project the local ~/.gbrain/config.json currently points at, so only unclaimed gbrain-shaped projects come back. Active-ref detection parses the pooler URL's user portion (postgres.<ref>:<pw>@...). delete-project is a thin DELETE /v1/projects/{ref} wrapper with no confirmation of its own — the skill's UI layer owns the per-project confirm AskUserQuestion loop. Keeps responsibilities clean: the bin manages HTTP; the skill manages user intent. Both subcommands reuse the existing api_call retry+backoff and the same PAT discipline (env only, never argv). Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * test(setup-gbrain): list-orphans active-ref filtering + delete-project 404 6 new tests bringing the supabase-provision suite to 28: list-orphans: - Filters to gbrain-prefixed projects, excludes the active-ref derived from ~/.gbrain/config.json's pooler URL - Treats all gbrain-prefixed projects as orphans when no config exists (first run on a new machine) - Respects custom --name-prefix for users who named their brain something else delete-project: - Happy path sends DELETE /v1/projects/<ref> and returns {deleted_ref} - 404 surfaces cleanly (exit 2, "404" in stderr) - Missing <ref> positional rejected with exit 2 Uses per-test tmpdir HOME with a stubbed ~/.gbrain/config.json so active-ref extraction runs against deterministic fixtures. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * chore: regenerate setup-gbrain SKILL.md after main merge * chore: bump version and changelog (v1.12.0.0) Ships /setup-gbrain and its supporting infrastructure end-to-end: per-remote trust policy, installer with PATH-shadow guard, shared secret-read helper, structural URL verifier, Supabase Management API wrapper, /health GBrain dimension, secret-sink test harness. 100 new tests across 5 suites, all green. Three pre-existing test failures noted as P0 in TODOS.md. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * docs: add USING_GBRAIN_WITH_GSTACK.md + update README for /setup-gbrain README changes: - Rewrote the "Cross-machine memory with GBrain sync" section into "GBrain — persistent knowledge for your coding agent." Covers the three /setup-gbrain paths (Supabase existing URL, auto-provision, PGLite local), MCP registration, per-remote trust triad, and the (still-separate) memory sync feature. - Added /setup-gbrain row to the skills table pointing at the full guide. - Added /setup-gbrain to both skill-list install snippets. - Added USING_GBRAIN_WITH_GSTACK.md to the Docs table. New doc (USING_GBRAIN_WITH_GSTACK.md): - All three setup paths with trust-surface caveats - MCP registration details (and honest Claude-Code-v1 scoping) - Per-remote trust triad semantics + how to change a policy - Switching engines (PGLite ↔ Supabase) via --switch - GStack memory sync + its relationship to the gbrain knowledge base - /setup-gbrain --cleanup-orphans for orphan Supabase projects - Full command + flag reference, every bin helper, every env var - Security model: what's enforced in code, what's enforced by the leak harness, and the honest limits of v1 - Troubleshooting: PATH shadowing, direct-connection URL reject, auto-provision timeout, stale lock, policy file hand-edits, migrate hang - Why-this-design section explaining the non-obvious choices Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * fix(brain-sync): secret scanner now catches Bearer-prefixed auth tokens in JSON The bearer-token-json regex value charset was [A-Za-z0-9_./+=-]{16,}, which does NOT permit spaces. Real HTTP auth headers embed the scheme name with a literal space — "Bearer <token>" — so the value portion actually starts with "Bearer " and the existing regex couldn't match. Result: any JSON blob containing "authorization":"Bearer ..." would slip past the scanner and sync to the user's private brain repo with the bearer token inline. Added optional (Bearer |Basic |Token )? prefix in front of the value charset. Now matches the common auth-scheme forms without broadening the matcher to tolerate arbitrary whitespace (which would false-positive on lots of benign JSON). Verified against 5 positive cases (bearer-in-json, clean bearer, apikey no-prefix, token with Bearer, password no-prefix) + 3 negative cases (too-short tokens, non-secret field names like username, random JSON). This closes the P0 security regression first noticed during v1.12.0.0 /ship. brain-sync.test.ts now passes all 7 secret-scan fixtures. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * test: mock-gh integration tests for gstack-brain-init auto-create path 8 tests covering the gh-repo-create happy path that had zero coverage before. Existing brain-sync.test.ts always passes --remote <bare-url> to bypass gh entirely, so the interactive default ("press Enter, we'll run gh repo create for you") was shipping on trust. Test strategy: write a bash stub for gh that records every call into a file, then run gstack-brain-init with that stub on PATH. Assertions verify: gh auth status is checked, gh repo create fires with the computed gstack-brain-<user> default name + --private + --source flags, fall-through to gh repo view when create reports already-exists, user-provided URL bypasses gh entirely, gh-not-on-path and gh-not-authed branches both prompt for URL, --remote flag short-circuits all gh calls, conflicting-remote re-runs exit 1 with a clear message. No real GitHub, no live auth. Gate tier — runs on every commit. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * test(e2e): privacy-gate AskUserQuestion fires from preamble (periodic tier) Two periodic-tier E2E tests exercising the preamble's privacy gate end-to-end via the Agent SDK + canUseTool. Previously uncovered: - Positive: stages a fake gbrain on PATH + gbrain_sync_mode_prompted=false in config, runs a real skill, intercepts tool-use. Asserts the preamble fires a 3-option AskUserQuestion matching the canonical prose ("publish session memory" / "artifact" / "decline") and does NOT fire a second time in the same run (idempotency within session). - Negative: same staging but prompted=true. Asserts the gate stays silent even with gbrain detected on the host. Registered in test/helpers/touchfiles.ts as `brain-privacy-gate` (periodic) with dependency tracking on generate-brain-sync-block.ts, the three gstack-brain-* bins, gstack-config, and the Agent SDK runner. Diff-based selection re-runs the E2E when any of those change. Cost: ~$0.30-$0.50 per run. Only fires under EVALS=1 EVALS_TIER=periodic; gate tier stays free. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * docs: update TODOS for bearer-json fix + new brain-sync test coverage Moves the bearer-json secret-scan regression from the P0 "pre-existing failures" block into the Completed section with full context on the fix, the mock-gh tests, the E2E privacy-gate tests, and the touchfile registration. Remaining P0s are the GSTACK_HOME config-isolation bug and the stale Opus 4.7 overlay pacing assertion, both unrelated. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * fix(test): E2E privacy gate — ambient env + skill-file prompt Two fixes to get the E2E actually running end-to-end (first attempt failed at the SDK auth step, second at the assertion step): 1. Don't pass an explicit `env:` object to runAgentSdkTest. The SDK's auth pipeline misses ANTHROPIC_API_KEY when env is supplied as an object (verified against the plan-mode-no-op test, which passes no env and auths cleanly). Mutate process.env before the call instead, and restore the originals in finally so other tests don't inherit the ambient mutation. 2. The "Run /learn with no arguments" user prompt was too narrow — the model reduced it to a direct action and skipped the preamble privacy-gate directives entirely, so zero AskUserQuestions fired. Mirror the plan-mode-no-op pattern: point the model at the skill file on disk and ask it to follow every preamble directive. Bumped maxTurns from 6 to 10 to give the preamble room to execute. Verified both tests pass under `EVALS=1 EVALS_TIER=periodic bun test test/skill-e2e-brain-privacy-gate.test.ts` against a real ANTHROPIC_API_KEY. Cost per run: ~$0.30-$0.50 per test. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * docs(CLAUDE.md): source ANTHROPIC/OPENAI keys from ~/.zshrc for paid evals Conductor workspaces don't inherit the interactive shell env, so both API keys are absent from the default process env even though they're set in ~/.zshrc. Documents the source-from-zshrc pattern (grep + eval, never echo the value) plus the Agent SDK gotcha: do NOT pass env as an object to runAgentSdkTest — mutate process.env ambiently and restore in finally. Discovered this during the brain-privacy-gate E2E. First run failed at SDK auth with 401; second failed because explicit env handoff bypassed the SDK's own auth routing. Fix pattern now codified so the next paid-eval session in a Conductor workspace doesn't hit the same two dead ends. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com> |