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gstack treated GBRAIN_HOME as the config directory; gbrain's configDir() treats it as the PARENT and always appends `.gbrain` itself (the contract is explicit in gbrain's source: GBRAIN_HOME=/tmp/x → /tmp/x/.gbrain/ config.json). With GBRAIN_HOME set, gstack classified engine status from a file gbrain never reads — the probe's two halves (file checks vs the spawned `gbrain sources list`) looked at DIFFERENT installs, so any resulting status was arbitrary: missing-config/broken-config against healthy installs, or a thin-client marker gstack saw that gbrain itself reported as "No brain configured". New shared resolver `gbrainConfigDir()` in lib/gbrain-exec.ts is the single source of truth. All seven gstack sites route through the contract: - lib/gbrain-local-status.ts gbrainConfigPath (the classifier's file half) - bin/gstack-gbrain-detect GBRAIN_CONFIG + readRemoteMcpUrl - lib/gbrain-exec.ts buildGbrainEnv (the probe's DATABASE_URL seed — fixing only the classifier would have left the split-brain in the spawn half, flagged by the reporter) - lib/gbrain-guards.ts gbrainHome (clones-dir + autopilot-lock paths) - lib/gstack-memory-helpers.ts gbrainConfigPath (engine-tier fallback) - bin/gstack-gbrain-install pre-doctor config check (shell) Unit tests cover GBRAIN_HOME set (config found at $GBRAIN_HOME/.gbrain), the old flat layout explicitly NOT read (both classifier and buildGbrainEnv), and unset (~/.gbrain unchanged). Existing fixtures that encoded the deviant flat layout are updated to gbrain's contract. Root-cause analysis by @d-danielsun in #2521. Deviation from the 3-site plan spec: the same deviant resolution existed in four more sites (buildGbrainEnv, gbrain-guards, memory-helpers, gbrain-install); fixing only three would have left gstack disagreeing with itself as well as with gbrain, so the whole class moved to the shared resolver in one change. Fixes #2521 Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>