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The pack's blob list is the copied index's blobs that HEAD's tree lacks, so an intent-to-add entry's empty blob and the stages of an unmerged entry travel too (the HEAD-only diff list dropped both); gitlinks still skip. The live-checkout test adds an intent-to-add entry, which the VM fsck assertion covers. Co-authored-by: capy-ai[bot] <230910855+capy-ai[bot]@users.noreply.github.com>