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Garry TanandClaude Fable 5
9af589bb73
On a global-git install with gbrain, ./setup and 'gstack-config gbrain-refresh' ran gen:skill-docs:user IN PLACE inside the install checkout, rewriting ~16 TRACKED SKILL.md files. The checkout stayed permanently dirty, every /gstack-upgrade 'git stash' saved a redundant snapshot of generated content, and the growing stash list invited a 'git stash pop' that would lay stale instruction markdown from an older gstack over the current version — a quiet wrong-rules failure mode. Fix, wired through machinery that already existed (gen-skill-docs --out-dir + the symlink install layer): brain-aware SKILL.md now renders into the untracked ~/.gstack/render/claude, and both Claude installers serve the render when present — setup's link_claude_skill_dirs prefers $GSTACK_HOME/render/claude/<skill>/SKILL.md, and bin/gstack-relink does the same so a later config change can't silently flip skills back to the blockless canonical source. setup wipes and rebuilds the render each run, repoints installed skills after a successful render, and removes a stale render (re-linking canonical) when gbrain is gone. gbrain-refresh renders to the out-dir and repoints via relink; its 'this dirties the install's git tree' caveat is retired because it no longer does. A one-time upgrade migration (gstack-upgrade/migrations/v1.67.0.0.sh, F12) restores the legacy dirt: unstaged modifications to SKILL.md / sections/ *.md files in the install checkout are git-checkout'd back to canonical; anything outside that footprint (user edits, untracked files, staged work) is left alone and reported. Idempotent, non-fatal, symlinked installs skipped. Tests: render-preference behavior for both installers, static pins that every executable :user invocation carries --out-dir and the caveat text is gone, migration fixture (restore/leave/idempotent/no-op matrix), and the existing out-dir render test now asserts 'git status --porcelain' gains zero new entries across a full :user render. Fixes #2569 Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>