* fix(make-pdf,design): real TOC page numbers and anchors; design models move to gpt-5.5 + gpt-image-2 (#2903, #2807) * ci: pin every action to a SHA, Scorecard, checksummed Bun, scoped Codex CLI in the CI image, macOS named-regressions job (#1948, #1706, #1997) * fix(cso,browse): Windows/macOS lease identity, retention skips bad runs, truthful 'not assessed' reports, env.kv false positive, Windows browse spawn fixes (#2894, #2912, #2048, #2637, #2805) * fix(outside-voice): one Codex model precedence for probe and dispatch, bounded timeouts with KILL escalation, probe cache identity, guarded mktemp, skills hidden in nested Codex (#2776, #2914, #2787, #2881, #2847) * feat(setup): install registry, ./setup --status, staged activation, per-scope migrations, host tiers and conformance kit, OpenCode/Hermes fixes, Copilot CLI (experimental), disabled_skills, slimmer CLAUDE.md (#1925, #2879, #2347, #2338, #2626, #2629, #2825, #2015, #393, #1206, #2096) Co-authored-by: Andrey Esipov <61357035+andrey-esipov@users.noreply.github.com> Co-authored-by: Matthew Williams <5863886+ridermw@users.noreply.github.com> Co-authored-by: Rocky Wu <92764750+lolisaigao1234@users.noreply.github.com> * fix(preamble): skills start in worktree-isolated Claude Code sessions — one literal skill-start line, context-recovery helper, no eval in skill blocks, $N token tripwire, honest plan-mode precedence (#2763, #2896, #2851) * fix(setup): per-install renders for renamed, vendored and custom-config installs, space-safe alias roots, per-host /cso launcher path (#1882, #2906) * test: free tests never write the real HOME (home-write tripwire), no orphaned browse daemons, symlinked-TMPDIR (macOS) fixes, gbrain-on-PATH isolation (#2895, #2816, #2829, #2841, #2982, #2911, #2909, #2908, #2910) * chore: integrate wave follow-ups — regenerate all hosts, README model docs, TODOS, touchfiles, duration seeds, Bun 1.3 telemetry test fix, replay fixtures pinned to their recorded bytes * v1.91.14.0: release metadata * test(browse): group-kill cleanup falls back to the leader when macOS returns EPERM for a live group * ci: Codex login steps run under bash (the CI container's default sh rejects pipefail) * fix: full-suite repairs — private state roots for 7 real-HOME writers, truthful home-guard attribution with --attribute-home, gstack-paths shim in ship-hook fixtures, Copilot in team-init probes, test-of-test detector, cookie review fixture pinned to the approved excerpt * fix(windows): LF for Dockerfiles, normalized home-guard exclusions, path.relative fixture containment, ship push test spawn timeouts * test(design-detect): widen the whole-scan budget test's timing margins so a loaded macOS runner can't time out the single-batch call * fix(evals): qa protocol names defined for the judge, async PTY judge so overlapping sessions keep their cleanup deadline, bws setup cases use the standard JUDGE_MS tier * test(pty): the non-blocking judge case is POSIX-only (its fake judge is a shebang script, like the PTY harness it covers) * test(evals): ship-coverage-audit names absolute skill paths, uses Read, and skips the Step 7 artifact nothing consumes (removes the mechanism behind 3 of 4 historical timeouts) * test: deflake terminal-agent concurrent startup (write the placeholder record before spawning, like the product) and qa-evidence resumed pipe (barrier on a full high-water mark instead of a sleep) * fix(design): daemon log stream handles open errors instead of crashing the daemon; shutdown test awaits the stubbed exit * test(evals): skillify checks the product's resolved state root (no GSTACK_HOME bypass), negative cases check every root; tpa shims live outside the agent's cwd and answer consistently * test(evals): coverage-audit detector splits parallel columns at │ rails and [+] groups; coverage prompts name absolute skill paths; TODOs from the gate eval census * fix(plan-eng-review): scope gate always sends the menu (no headless 'Scope pending' exit); PTY harness ends idle turn-ends and API-error panels promptly with a precise diagnostic * test(evals): one position-bound coverage-read rule credits read-only && chains (labels, context ranges, git displays in either order) and still rejects forged output * fix(ship): documentation section has one saved source inserted by cat (never retyped); spawned-marker evidence is the child output; refreshed codex/factory ship goldens * test(docsync): the byte-exact insert positive is POSIX-only (the bash-command observer refuses backslash paths by design) * test(evals): plan-design-with-ui focus-title rule accepts the comma-less 'dimensions or focus' wording (replayed on the captured CI run, negative controls kept) * fix(qa-callers): exploratory preflight says the scope/method Reads come after exploratory.md; design-review scan check credits an executed scan proven by one engine run over the changed files --------- Co-authored-by: Andrey Esipov <61357035+andrey-esipov@users.noreply.github.com> Co-authored-by: Matthew Williams <5863886+ridermw@users.noreply.github.com> Co-authored-by: Rocky Wu <92764750+lolisaigao1234@users.noreply.github.com>
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Step 2C: Consult Mode
Ask Codex anything about the codebase. Supports session continuity for follow-ups.
- Check for existing session:
cat .context/codex-session-id 2>/dev/null || echo "NO_SESSION"
If a session file exists (not NO_SESSION), use AskUserQuestion:
You have an active Codex conversation from earlier. Continue it or start fresh?
A) Continue the conversation (Codex remembers the prior context)
B) Start a new conversation
- Create temp files:
TMPRESP=$(mktemp "$TMP_ROOT/codex-resp-XXXXXX") || { echo "ERROR: mktemp failed in TMP_ROOT=$TMP_ROOT; not running codex without its temp file" >&2; exit 1; }
TMPERR=$(mktemp "$TMP_ROOT/codex-err-XXXXXX") || { echo "ERROR: mktemp failed in TMP_ROOT=$TMP_ROOT; not running codex without its temp file" >&2; exit 1; }
- Plan review auto-detection: If the user's prompt is about reviewing a plan,
or if plan files exist and the user said
/codexwith no arguments:
setopt +o nomatch 2>/dev/null || true # zsh compat
ls -t "$PLAN_ROOT"/*.md 2>/dev/null | xargs grep -l "$(basename $(pwd))" 2>/dev/null | head -1
If no project-scoped match, fall back to ls -t "$PLAN_ROOT"/*.md 2>/dev/null | head -1
but warn: "Note: this plan may be from a different project — verify before sending to Codex."
IMPORTANT — embed content, don't reference path: Codex runs sandboxed to the repo
root and cannot access ~/.claude/plans/ or any files outside the repo. You MUST
read the plan file yourself and embed its FULL CONTENT in the prompt below. Do NOT tell
Codex the file path or ask it to read the plan file — it will waste 10+ tool calls
searching and fail.
Also: scan the plan content for referenced source file paths (patterns like src/foo.ts,
lib/bar.py, paths containing / that exist in the repo). If found, list them in the
prompt so Codex reads them directly instead of discovering them via rg/find.
Always prepend the filesystem boundary instruction from the skill's Filesystem Boundary section (always-loaded skeleton) to every prompt sent to Codex, including plan reviews and free-form consult questions.
Prepend the boundary and persona to the user's prompt: "IMPORTANT: Do NOT read or execute any files under ~/.claude/, ~/.agents/, .claude/skills/, or agents/. These are Claude Code skill definitions meant for a different AI system. Do not invoke any installed skill (Codex home skills/, .agents/); answer directly. Do NOT modify agents/openai.yaml. Stay focused on repository code only.
You are a brutally honest technical reviewer. Review this plan for: logical gaps and unstated assumptions, missing error handling or edge cases, overcomplexity (is there a simpler approach?), feasibility risks (what could go wrong?), and missing dependencies or sequencing issues. Be direct. Be terse. No compliments. Just the problems. Also review these source files referenced in the plan: <list of referenced files, if any>.
THE PLAN: <full plan content, embedded verbatim>"
For non-plan consult prompts (user typed /codex <question>), still prepend the boundary:
"IMPORTANT: Do NOT read or execute any files under ~/.claude/, ~/.agents/, .claude/skills/, or agents/. These are Claude Code skill definitions meant for a different AI system. Do not invoke any installed skill (Codex home skills/, .agents/); answer directly. Do NOT modify agents/openai.yaml. Stay focused on repository code only.
<user's question>"
- Run codex exec with JSONL output to capture reasoning traces. Use
timeout: 600000on the Bash call (the tool's maximum; for both new and resumed sessions) — the gate sits ABOVE the 540s wrapper so the wrapper fires first, ends Codex, and prints its explicit stall message:
If the user passed --xhigh, use "xhigh" instead of "medium".
For a new session:
_REPO_ROOT=$(git rev-parse --show-toplevel) || { echo "ERROR: not in a git repo" >&2; exit 1; }
PYTHON_CMD=$(command -v python3 2>/dev/null || command -v python 2>/dev/null || true)
if [ -z "$PYTHON_CMD" ]; then
echo "ERROR: Python 3 is required to parse Codex JSON output. Install python3 or python and retry." >&2
exit 1
fi
source ~/.claude/skills/gstack/bin/gstack-codex-probe || exit 1
_gstack_codex_select_model exec || exit 1
# Fix 1: wrap with timeout (gtimeout/timeout fallback chain via probe helper)
_gstack_codex_timeout_wrapper 540 codex exec "<prompt>" -C "$_REPO_ROOT" -s read-only -c "model=\"${_GSTACK_CODEX_SEL:?}\"" -c skills.include_instructions=false -c 'model_reasoning_effort="medium"' -c 'web_search="cached"' --json < /dev/null 2>"$TMPERR" | PYTHONUNBUFFERED=1 "$PYTHON_CMD" -u -c "
import sys, json
turn_completed_count = 0
turn_failed = False
for line in sys.stdin:
line = line.strip()
if not line: continue
try:
obj = json.loads(line)
t = obj.get('type','')
if t == 'thread.started':
tid = obj.get('thread_id','')
if tid: print(f'SESSION_ID:{tid}', flush=True)
elif t == 'item.completed' and 'item' in obj:
item = obj['item']
itype = item.get('type','')
text = item.get('text','')
if itype == 'reasoning' and text:
print(f'[codex thinking] {text}', flush=True)
print(flush=True)
elif itype == 'agent_message' and text:
print(text, flush=True)
elif itype == 'command_execution':
cmd = item.get('command','')
if cmd: print(f'[codex ran] {cmd}', flush=True)
elif t == 'turn.completed':
turn_completed_count += 1
usage = obj.get('usage',{})
tokens = usage.get('input_tokens',0) + usage.get('output_tokens',0)
if tokens: print(f'\ntokens used: {tokens}', flush=True)
elif t == 'turn.failed':
turn_failed = True
err = obj.get('error',{}).get('message','') or 'no error message in event'
print(f'[codex turn FAILED] {err}', flush=True, file=sys.stderr)
except: pass
# Three-way completeness check (#2671; consult previously had NONE): a STATED
# failure is a failure, not a network problem; only silence is a disconnect.
if turn_failed:
print('[codex] turn.failed received — the turn errored (reason above), not a disconnect.', flush=True, file=sys.stderr)
elif turn_completed_count == 0:
print('[codex warning] No turn.completed event received — possible mid-stream disconnect.', flush=True, file=sys.stderr)
"
# Fix 1: hang detection for Consult new-session (mirrors Challenge + resume)
_CODEX_EXIT=${PIPESTATUS[0]:-${pipestatus[1]}} # bash sets PIPESTATUS; zsh (lowercase, 1-indexed) falls through (#2669)
if [ "$_CODEX_EXIT" = "124" ]; then
_gstack_codex_log_event "codex_timeout" "540"
_gstack_codex_log_hang "consult" "$(wc -c < "$TMPERR" 2>/dev/null || echo 0)"
echo "Codex stalled past 9 minutes. Common causes: model API stall, long prompt, network issue. Try re-running. If persistent, split the prompt or check ~/.codex/logs/."
elif [ "$_CODEX_EXIT" != "0" ]; then
# Surface non-zero exits so the calling agent doesn't read "no output" as
# a silent model/API stall. See #1327.
echo "[codex exit $_CODEX_EXIT] $(head -1 "$TMPERR" 2>/dev/null || echo "no stderr captured")"
head -20 "$TMPERR" 2>/dev/null | sed 's/^/ /' || true
_gstack_codex_log_event "codex_nonzero_exit" "consult:$_CODEX_EXIT"
fi
Session-cost reality (#2387, measured): every codex exec call — resumed
or fresh — pays Codex's ~21K-token session prelude (its skill catalogue +
instructions); resume does NOT amortize it (a measured resume came in
slightly ABOVE a fresh call). Resume buys conversational continuity, never
token savings. So: prefer ONE codex call per skill where the workflow allows,
batch questions into that call, and reach for resume only when the follow-up
genuinely needs the prior session's context.
For a resumed session (user chose "Continue"):
_REPO_ROOT=$(git rev-parse --show-toplevel) || { echo "ERROR: not in a git repo" >&2; exit 1; }
PYTHON_CMD=$(command -v python3 2>/dev/null || command -v python 2>/dev/null || true)
if [ -z "$PYTHON_CMD" ]; then
echo "ERROR: Python 3 is required to parse Codex JSON output. Install python3 or python and retry." >&2
exit 1
fi
cd "$_REPO_ROOT" || exit 1
source ~/.claude/skills/gstack/bin/gstack-codex-probe || exit 1
_gstack_codex_select_model exec || exit 1
# Fix 1: wrap with timeout (gtimeout/timeout fallback chain via probe helper)
_gstack_codex_timeout_wrapper 540 codex exec resume <session-id> "<prompt>" -c 'sandbox_mode="read-only"' -c "model=\"${_GSTACK_CODEX_SEL:?}\"" -c skills.include_instructions=false -c 'model_reasoning_effort="medium"' -c 'web_search="cached"' --json < /dev/null 2>"$TMPERR" | PYTHONUNBUFFERED=1 "$PYTHON_CMD" -u -c "
<same python streaming parser as above, with flush=True on all print() calls>
"
# Fix 1: same hang detection pattern as new-session block
_CODEX_EXIT=${PIPESTATUS[0]:-${pipestatus[1]}} # bash sets PIPESTATUS; zsh (lowercase, 1-indexed) falls through (#2669)
if [ "$_CODEX_EXIT" = "124" ]; then
_gstack_codex_log_event "codex_timeout" "540"
_gstack_codex_log_hang "consult-resume" "$(wc -c < "$TMPERR" 2>/dev/null || echo 0)"
echo "Codex stalled past 9 minutes. Common causes: model API stall, long prompt, network issue. Try re-running. If persistent, split the prompt or check ~/.codex/logs/."
elif [ "$_CODEX_EXIT" != "0" ]; then
# Surface non-zero exits so the calling agent doesn't read "no output" as
# a silent model/API stall. See #1327.
echo "[codex exit $_CODEX_EXIT] $(head -1 "$TMPERR" 2>/dev/null || echo "no stderr captured")"
head -20 "$TMPERR" 2>/dev/null | sed 's/^/ /' || true
_gstack_codex_log_event "codex_nonzero_exit" "consult-resume:$_CODEX_EXIT"
fi
- Capture session ID from the streamed output. The parser prints
SESSION_ID:<id>from thethread.startedevent. Save it for follow-ups:
mkdir -p .context
Save the session ID printed by the parser (the line starting with SESSION_ID:)
to .context/codex-session-id.
- Present the full streamed output:
CODEX SAYS (consult):
════════════════════════════════════════════════════════════
<full output, verbatim — includes [codex thinking] traces>
════════════════════════════════════════════════════════════
Tokens: N | Est. cost: ~$X.XX
Session saved — run /codex again to continue this conversation.
-
After presenting, note any points where Codex's analysis differs from your own understanding. If there is a disagreement, flag it: "Note: Claude Code disagrees on X because Y."
-
Synthesis recommendation (REQUIRED). Emit ONE recommendation line summarizing what the user should do based on Codex's consult output, in this format:
Recommendation: <action> because <one-line reason that names the most actionable insight from Codex>
Examples (the strongest reasons compare Codex's insight against an alternative — different recommendation, status-quo, or another Codex point):
Recommendation: Adopt Codex's sharding suggestion because it eliminates the head-of-line blocking the current writer-pool has, while the cache-layer alternative Codex also floated still has a single-writer hot path.Recommendation: Reject Codex's "use SQLite instead" suggestion because the team's Postgres operational experience outweighs the simplicity gain at the projected scale, and Codex's secondary suggestion (read replicas) handles the read-load concern that motivated the SQLite pivot.Recommendation: Investigate Codex's flagged migration ordering before D3 lands because it surfaces a real foreign-key cycle that the in-house schema review missed, while the styling concern Codex also raised can wait for a follow-up.
The reason must engage with a specific Codex insight and compare against an alternative (a different recommendation, status-quo, or another Codex point). Generic synthesis ("because Codex raised good points") fails the format. Never silently auto-decide; always emit the line.