Files
remove-ai-watermarks/scripts/synthid_phase_carrier.py
T
Victor Kuznetsov 07b07634cf Merge the docs/arxiv-paper-review research line into main (#95)
* Add rigorous SynthID research and evaluation harness

* Record SynthID cross-epoch validation results

* Reset SynthID detector hypotheses to paired training

* Add paired wavelet and spectral SynthID probes

* Record closed-corpus SynthID detector ablations

* Add registered SynthID phase probing

* Add periodic SynthID tile probing

* Add calibrated SynthID pixel detector

* Harden scale-registered SynthID detection

* Record SynthID phase and channel rescue findings

* Add production SynthID routing and OpenAI verification

* Reframe periodic pixel route as pipeline lattice; confirm and harden detection

The frozen periodic experts read an origin-anchored generation-pipeline lattice destroyed by a crop off the tile grid, not the crop-robust SynthID mark. Route the pixel result as an experimental pipeline_lattice signal kept out of the watermark inventory, and carry the crop sensitivity in every verdict envelope.

Add split-patch phase/amplitude/codeword confirmation for registered-v3, affine-lattice and cyclostationary research probes, and timeout/retry/error-taxonomy hardening for the official OpenAI verification path.

* Record pipeline-lattice reframing and registered-v3 phase lock

Document that the pixel route detects an origin-anchored lattice rather than the watermark, and record the registered-v3 two-pixel phase-lock measurement: a 2px diagonal crop killed all 36 tested detections (28 foreign-generator, 8 Google) with recovery only at offsets that are multiples of four. Update README, CLI, Python API, supported-signals, known-limitations, module-internals, the SynthID reference, and the detector research plan.

* Split SynthID campaign docs by detector, classifiers, and removal

Keep Model 1 as a research AI-versus-camera result outside the library.
Retire the mixed oracle-ladders page to a routing hub and mark the plan
file as a chronological archive.

* Keep 2026-08-22 SynthID campaign results in research docs only

Drop Bayer, Model 1, and lattice re-check numbers from user guides and
module internals. The library surface is unchanged.

* Unplug lattice detector from package, expand research docs

* Remove lattice detector sources from the public package

* Document SynthID GitHub sweep findings

* Document general AI classifier sweep

* Document modern-negative taxonomy audit and classifier doc split

Split general AI-classifier research into ai-generated-image-classifiers.md
and record the modern-negative campaign: Unsplash/Openverse date-clean cells,
contamination controls, quarter-hard paired result, closed linear veto and
taxonomy-continuation arms.

pre-commit: 1) maintain.sh - exit 1, known uv-secure lightning advisory with no upstream fix (same triage as main); core checks separately green (ruff, format, pyright, 1564 tests); 2) /simplify - docs-only single pass, no findings; 3) docs sync - split references updated everywhere, none stale; 4) CLAUDE.md - routing line already updated, compliant

* Record wild-AI audit, Meta provider class, and stock-negative expansion

The wild vendor-flagged AI cell (300 stratified rows) puts Model 1 recall at
69.7% on unknown-renderer stock AI; the stock-negative harvest triples the
modern fashion/product cells and confirms the combined-pool veto control;
the Meta muse-image corpus doubles to 132 rows with its margin sweep; a
per-channel cv2 reference fixes the latent fold test under cv2 4.10.0.

pre-commit: 1) maintain.sh - exit 1, known uv-secure lightning advisory with no upstream fix; core checks separately green (ruff, format, pyright, 1665 tests); 2) /simplify - docs-only single pass, no findings; 3) docs sync - new run references point at the gitignored research store, none stale; 4) CLAUDE.md - compact, no changes needed

* Close representation-change campaign: both candidates falsified

Pre-registered gates (AI-test >=1772, fresh OI <=50, Kodak 0, FLUX >=288,
EvalGEN >=95) rejected DINOv2-L ridge head (1427/1847, 162/3000, 1/24, 29/300,
5/100) and the paired-reconstruction FFT tower (14/1847, 12/3000, 0/24, 0/300,
0/100; contract learned at 0.949 pairwise separation but no transfer to
production generators). Campaign verdict: general classifier beyond local
scale as pursued; product stays on documented remainder.

pre-commit: 1) maintain.sh - exit 1, known uv-secure lightning advisory with no upstream fix; core checks green minutes ago (ruff, format, pyright, 1665 tests); 2) /simplify - docs-only single pass, no findings; 3) docs sync - verdict mirrored in data/research/REPRESENTATION-CAMPAIGN.md, no stale refs; 4) CLAUDE.md - no changes

* Record full failure map, H2 router falsification, and H3 process detector closure

20 measured negative domains with batch-2 (memes, whiteboards, tickets, book
pages). H2 domain router falsified: 97.9% of AI-test looks structured, every
family 94-100%. H3 process detector on 369 contrastive pairs from three
generators (OpenAI gpt-image-1-mini, Meta muse-image-1.0, Gemini flash-image)
achieves 0.909 pairwise AUC on training pairs but transfers at AUC 0.55-0.60
to production AI; human receipts score higher than any AI family. The
generator-specific spectral trace does not generalize across three generators,
closing the process-trace family in its current form.

pre-commit: 1) maintain.sh - exit 1, known lightning advisory; core green (ruff, format, pyright, 1665 tests); 2) /simplify - docs + research scripts, single pass, no findings; 3) docs sync - all artifacts in data/research/, no stale refs; 4) CLAUDE.md - no changes

* Record H4-H6 research hypotheses: MLP probe, spectral invariant, TTA voting

H4 (MLP on frozen CLIP): 98.6% AI-test recall but 15.8% photo FPR — same
trade-off curve as quarter-hard. H5 (spectral invariant from CVPR 2025):
2.4% recall, the 1/f^alpha profile does not discriminate current generators.
H6 (TTA voting): fixes museum FP but not documents/UI/fashion, loses 9% recall.
All three falsified against frozen gates; ten total closed hypotheses now
document the CLIP-L representation limit from every angle.

Also records the provider cascade across all 20 domains (69.8% stray on
documents mirrors the detector failure map) and the full Y-phase campaign
PSNR data awaiting oracle rate-limit reset.

pre-commit: 1) maintain.sh - exit 1, known lightning advisory; core green (ruff, format, pyright, 1665 tests); 2) /simplify - docs-only single pass, no findings; 3) docs sync - all artifacts in data/research/, no stale refs; 4) CLAUDE.md - no changes

* Fix Y-phase frequency convention, record H4-H6 and campaign results

The initial Y-phase campaign targeted FFT bins 16-32 instead of spatial
periods 16-32 px (1/32 to 1/16 cycles/px). After the fix, the full-octave
Y-phase scramble reproduces the known kill (not_detected at 20.5 dB on s1
at native 1122x1402). Partial sub-bands are visually invisible (42.5 dB)
but stay detected: the mark is distributed across the full octave, not
concentrated. Point intervention is not viable within this frequency band.

H4 MLP probe: 98.6% recall, 15.8% FPR (same trade-off wall).
H5 spectral invariant: 2.4% recall (1/f^alpha does not discriminate).
H6 TTA voting: fixes museum FP but not documents/UI/fashion.

pre-commit: 1) maintain.sh - exit 1, known lightning advisory; core green (1665 tests, verified minutes ago); 2) /simplify - docs-only; 3) docs sync - all artifacts synced; 4) CLAUDE.md - no changes

* Add TC260 fifth class and per-class margin calibration to provider cascade

Five-head cascade (openai/google/tc260/meta/no_ai): openai 68.8%, google
76.6%, tc260 63.8%, meta 71.8% mean recall at uniform margin 0.50.
Per-class margins calibrated against 1.67% photo budget: openai 0.31,
google 0.29, tc260 0.39, meta 0.55. TC260 test recall 71.4% at calibrated
margins on 196 held-out images. Chinese-AIGC is a viable pixel class.

pre-commit: 1) maintain.sh - exit 1, known lightning advisory; core green (verified within the hour); 2) /simplify - research script, single pass; 3) docs sync - artifacts in data/research/; 4) CLAUDE.md - no changes

* Record universal detector v3-v8: diverse training shifts the curve

Fresh MLP on frozen CLIP embeddings with 49 negative domains (12,258 images)
and 5,043 AI positives achieves 93.0% AI-test recall with 39/49 domains at
zero false positives. Digital art FP dropped from 99.3% (Model 1) to 24.8%,
fashion from 62-71% to 12%, UI from 99.3% to 12%. Photo FPR 0.7%. The
improvement comes from training data diversity on frozen embeddings, not
representation change (v5 fine-tune proved this by undoing the gains).
Also adds .local-eval to ruff exclude so the gate covers only tracked files.

pre-commit: 1) maintain.sh - exit 1, known lightning advisory; core green (ruff, format, pyright, 1731 tests); 2) /simplify - docs + research; 3) docs sync - all artifacts in data/research/; 4) CLAUDE.md - no changes

* Add three-tier ensemble detector: DEFINITELY/POSSIBLY/LIKELY_HUMAN

Combines Model 1 and v8 into calibrated confidence tiers. DEFINITELY_AI
(both models agree) achieves 79.6% recall at 0.50% photo FPR with 46/49
domains at zero FP. The union reaches 93.3% recall at 1.80% photo FPR
with Kodak 0/24. First detector working across ALL content types with
per-tier calibrated error rates.

pre-commit: 1) maintain.sh - exit 1, known lightning advisory; core green (ruff, format, pyright, 1731 tests); 2) /simplify - docs + ensemble; 3) docs sync - artifacts in data/research/; 4) CLAUDE.md - no changes

* Add provider v2: diversity training eliminates document leakage

Same diversity-training insight applied to the provider cascade. Adding
3,769 structured negative features to training drops document/receipt
leakage from 69.8% to 5.1%, UI from 10% to 4.3%, fashion from 5-15% to
0-3%. AI recall improves: OpenAI 84% (was 75%), Google 88.8% (was 79%).
Photo leakage 1.4%. Worst regression: memes 47.9% (was 27%).

pre-commit: 1) maintain.sh - exit 1, known lightning advisory; core green (ruff, format, pyright, 1731 tests); 2) /simplify - provider v2; 3) docs sync - artifacts in data/research/; 4) CLAUDE.md - no changes

* Add universal v11: full taxonomy, 136 domains, 124 at zero FP

Master data plan mapped 148 visual domains. Massive collection (3,343
images, 73 domains from Openverse) plus gap-filler (724 images from
Safebooru anime/manga) expanded training to 19,768 images across 136
negative domains. Universal v11 (MLP-512 + Model 1 ensemble):
DEFINITELY 90.3% recall at 0.50% photo FPR, ANY 95.6% recall,
124/134 domains at exactly 0% FP, worst FP 13.8% (digital art).

New domains opened: anime, manga, chibi, mecha, vintage photos,
banknotes, newspapers, magazines, movie posters, antique maps,
watercolor/oil originals, patterns, cosmetics, real estate, 3D
renders, and 60+ more.

pre-commit: 1) maintain.sh - exit 1, known lightning advisory; core green (ruff, format, pyright, 1731 tests); 2) /simplify - docs + research; 3) docs sync - artifacts in data/research/; 4) CLAUDE.md - no changes

* Confirm representation limit: v12 fine-tune destroys structured FP despite 6x data

Fine-tuning CLIP tower on 19,518 images achieves 95.1% standalone recall
but returns to 100% FP on art/UI and 14/59 zero-FP domains (vs 124/134
for frozen v11). This is a representation property, not a data issue.
Frozen CLIP + MLP (v11) is the only working architecture. Also records
provider v3 trained on all negative domains.

pre-commit: 1) maintain.sh - exit 1, known lightning advisory; core green (ruff, format, pyright, 1731 tests); 2) /simplify - docs + research; 3) docs sync - artifacts in data/research/; 4) CLAUDE.md - no changes

* Document v13 plateau: 128/136 zero FP, frozen-CLIP ceiling confirmed

v13 with top-plan expansion (1,169 new images) improves domain coverage
to 128/136 at zero FP and reduces fashion FP to 5.3%, but DEFINITELY
recall plateaus at 89.6% and art FP at 15.9%. The frozen CLIP + MLP
architecture has reached its ceiling.

pre-commit: 1) maintain.sh - exit 1, known lightning advisory; core green (verified minutes ago, 1731 tests); 2) /simplify - docs-only; 3) docs sync - v13 recorded; 4) CLAUDE.md - no changes

* Document the 2026-08-31 photo-classifier freeze.

Record the AI-versus-camera contract, Meta v3 hold-out, Flickr UI
replacement, and that receipts stay out of the supported domain.

* Scrub Spaces catalog details from classifier research docs

* Record receipt layout-gate probe for the universal detector
2026-09-01 11:37:32 -07:00

385 lines
15 KiB
Python

"""Discover and evaluate an exact-geometry phase-carrier hypothesis.
The model is learned only from supplied images and stored as numeric arrays in
a pickle-free NPZ. It is a research baseline, not a proprietary SynthID
decoder. A valid detector claim still requires provider labels, same-provider
hard negatives, group-aware splits, and a locked operating point.
"""
from __future__ import annotations
import json
import logging
from dataclasses import asdict, dataclass
from pathlib import Path
import click
import numpy as np
from PIL import Image
from synthid_phase_registration import MAX_TRANSLATION_SHIFT, extract_frequency_values, register_phase_translations
log = logging.getLogger(__name__)
@dataclass(frozen=True)
class PhaseCarrierModel:
"""Sparse exact-geometry phase carrier learned from positive images."""
height: int
width: int
rows: np.ndarray
columns: np.ndarray
channels: np.ndarray
phases: np.ndarray
weights: np.ndarray
expected_magnitudes: np.ndarray
@dataclass(frozen=True)
class PhaseCarrierScore:
"""Alignment of one exact-geometry image with a phase-carrier model."""
path: str
score: float
active_weight_fraction: float
peak_count: int
@dataclass(frozen=True)
class RegisteredPhaseCarrierScore:
"""Best phase-carrier score across a bounded translation search."""
path: str
score: float
active_weight_fraction: float
peak_count: int
row_shift: int
column_shift: int
def _load_rgb(path: Path, *, height: int, width: int, canonicalize_geometry: bool = False) -> np.ndarray:
"""Load PATH as float64 RGB, optionally resizing to model geometry."""
with Image.open(path) as image:
rgb = image.convert("RGB")
if rgb.size != (width, height):
if not canonicalize_geometry:
raise ValueError(f"{path}: geometry {rgb.width}x{rgb.height} does not match {width}x{height}")
rgb = rgb.resize((width, height), Image.Resampling.LANCZOS)
return np.asarray(rgb, dtype=np.float64)
def _valid_frequency_mask(height: int, width: int, min_radius: float) -> np.ndarray:
"""Return eligible non-DC bins in an rFFT half-plane."""
rows = np.arange(height)
signed_rows = np.where(rows > height // 2, rows - height, rows)
columns = np.arange(width // 2 + 1)
radius = np.sqrt(np.square(signed_rows[:, None]) + np.square(columns[None, :]))
return (radius >= min_radius) & (columns[None, :] > 0)
def _leave_one_out_coherence(unit_sum: np.ndarray, held_out_unit: np.ndarray, count: float) -> np.ndarray:
"""Return phase coherence after removing HELD_OUT_UNIT from UNIT_SUM."""
if count <= 1.0:
raise ValueError("leave-one-out coherence requires at least two samples")
return np.abs((unit_sum - held_out_unit) / (count - 1.0))
def discover_model(
paths: list[Path],
*,
peak_count: int = 256,
min_radius: float = 15.0,
candidate_bins: np.ndarray | None = None,
) -> PhaseCarrierModel:
"""Learn a sparse phase-consensus model from exact-geometry PATHS."""
if len(paths) < 3:
raise ValueError("at least three positive images are required")
with Image.open(paths[0]) as first:
width, height = first.size
if min(height, width) < 64:
raise ValueError("images must be at least 64 pixels per side")
half_width = width // 2 + 1
unit_sum = np.zeros((height, half_width, 3), dtype=np.complex64)
magnitude_sum = np.zeros((height, half_width, 3), dtype=np.float64)
for path in paths:
pixels = _load_rgb(path, height=height, width=width)
for channel in range(3):
spectrum = np.fft.rfft2(pixels[:, :, channel])
magnitude = np.abs(spectrum)
unit_sum[:, :, channel] += np.divide(
spectrum,
magnitude,
out=np.zeros_like(spectrum),
where=magnitude != 0.0,
).astype(np.complex64)
magnitude_sum[:, :, channel] += magnitude
count = float(len(paths))
mean_unit = unit_sum / count
minimum_loo_coherence = np.ones((height, half_width, 3), dtype=np.float32)
for path in paths:
pixels = _load_rgb(path, height=height, width=width)
for channel in range(3):
spectrum = np.fft.rfft2(pixels[:, :, channel])
magnitude = np.abs(spectrum)
unit = np.divide(
spectrum,
magnitude,
out=np.zeros_like(spectrum),
where=magnitude != 0.0,
)
loo_coherence = _leave_one_out_coherence(unit_sum[:, :, channel], unit, count)
np.minimum(minimum_loo_coherence[:, :, channel], loo_coherence, out=minimum_loo_coherence[:, :, channel])
expected_magnitude = magnitude_sum / count
selection = np.power(minimum_loo_coherence.astype(np.float64), 4.0) * np.log1p(expected_magnitude)
selection *= _valid_frequency_mask(height, width, min_radius)[:, :, None]
if candidate_bins is None:
candidate_indices = np.flatnonzero(selection)
else:
bins = np.asarray(candidate_bins, dtype=np.int64)
if bins.ndim != 2 or bins.shape[1] != 3:
raise ValueError("candidate_bins must have shape (count, 3)")
if (
np.any(bins[:, 0] < 0)
or np.any(bins[:, 0] >= height)
or np.any(bins[:, 1] <= 0)
or np.any(bins[:, 1] > width // 2)
or np.any(bins[:, 2] < 0)
or np.any(bins[:, 2] > 2)
):
raise ValueError("candidate_bins contain out-of-range coordinates")
candidate_indices = np.unique(np.ravel_multi_index(bins.T, selection.shape))
candidate_indices = candidate_indices[selection.ravel()[candidate_indices] > 0.0]
candidate_count = len(candidate_indices)
if candidate_count < peak_count:
raise ValueError(f"only {candidate_count} eligible bins for {peak_count} peaks")
flat = selection.ravel()
candidate_scores = flat[candidate_indices]
chosen = np.argpartition(candidate_scores, -peak_count)[-peak_count:]
indices = candidate_indices[chosen]
indices = indices[np.argsort(flat[indices])[::-1]]
rows, columns, channels = np.unravel_index(indices, selection.shape)
raw_weights = selection[rows, columns, channels]
return PhaseCarrierModel(
height=height,
width=width,
rows=rows.astype(np.int32),
columns=columns.astype(np.int32),
channels=channels.astype(np.int8),
phases=np.angle(mean_unit[rows, columns, channels]).astype(np.float64),
weights=(raw_weights / np.sum(raw_weights)).astype(np.float64),
expected_magnitudes=expected_magnitude[rows, columns, channels].astype(np.float64),
)
def _frequency_values(pixels: np.ndarray, model: PhaseCarrierModel) -> np.ndarray:
"""Return MODEL's selected complex coefficients from PIXELS."""
return extract_frequency_values(pixels, model.rows, model.columns, model.channels)
def score_pixels(pixels: np.ndarray, model: PhaseCarrierModel, *, path: str = "<array>") -> PhaseCarrierScore:
"""Score exact-geometry RGB PIXELS against MODEL."""
if pixels.shape != (model.height, model.width, 3):
raise ValueError("pixel geometry does not match phase-carrier model")
values = _frequency_values(np.asarray(pixels, dtype=np.float64), model)
magnitude_gate = np.minimum(np.abs(values) / (model.expected_magnitudes + 1e-12), 1.0)
active_weights = model.weights * magnitude_gate
active_weight = float(np.sum(active_weights))
score = (
0.0
if active_weight == 0.0
else float(np.sum(active_weights * np.cos(np.angle(values) - model.phases)) / active_weight)
)
return PhaseCarrierScore(
path=path,
score=score,
active_weight_fraction=active_weight,
peak_count=len(model.rows),
)
def score_image(
path: Path,
model: PhaseCarrierModel,
*,
canonicalize_geometry: bool = False,
) -> PhaseCarrierScore:
"""Score PATH against MODEL, with optional geometry canonicalization."""
pixels = _load_rgb(
path,
height=model.height,
width=model.width,
canonicalize_geometry=canonicalize_geometry,
)
return score_pixels(pixels, model, path=str(path))
def score_translations(
path: Path,
model: PhaseCarrierModel,
*,
max_shift: int = 4,
canonicalize_geometry: bool = False,
) -> RegisteredPhaseCarrierScore:
"""Return the best score after compensating bounded integer translations."""
pixels = _load_rgb(
path,
height=model.height,
width=model.width,
canonicalize_geometry=canonicalize_geometry,
)
registration = register_phase_translations(
_frequency_values(pixels, model),
phases=model.phases,
weights=model.weights,
expected_magnitudes=model.expected_magnitudes,
rows=model.rows,
columns=model.columns,
height=model.height,
width=model.width,
max_shift=max_shift,
)
return RegisteredPhaseCarrierScore(
path=str(path),
score=registration.score,
active_weight_fraction=registration.active_weight_fraction,
peak_count=len(model.rows),
row_shift=registration.row_shift,
column_shift=registration.column_shift,
)
def save_model(path: Path, model: PhaseCarrierModel) -> None:
"""Save MODEL as a validated numeric NPZ artifact."""
path.parent.mkdir(parents=True, exist_ok=True)
np.savez_compressed(
path,
format_version=np.asarray(1, dtype=np.int32),
height=np.asarray(model.height, dtype=np.int32),
width=np.asarray(model.width, dtype=np.int32),
rows=model.rows.astype(np.int32),
columns=model.columns.astype(np.int32),
channels=model.channels.astype(np.int8),
phases=model.phases.astype(np.float32),
weights=model.weights.astype(np.float32),
expected_magnitudes=model.expected_magnitudes.astype(np.float64),
)
def load_model(path: Path) -> PhaseCarrierModel:
"""Load and validate a numeric phase-carrier artifact."""
with np.load(path, allow_pickle=False) as artifact:
if int(artifact["format_version"]) != 1:
raise ValueError("unsupported phase-carrier format version")
model = PhaseCarrierModel(
height=int(artifact["height"]),
width=int(artifact["width"]),
rows=np.asarray(artifact["rows"], dtype=np.int32),
columns=np.asarray(artifact["columns"], dtype=np.int32),
channels=np.asarray(artifact["channels"], dtype=np.int8),
phases=np.asarray(artifact["phases"], dtype=np.float64),
weights=np.asarray(artifact["weights"], dtype=np.float64),
expected_magnitudes=np.asarray(artifact["expected_magnitudes"], dtype=np.float64),
)
count = len(model.rows)
arrays = (model.columns, model.channels, model.phases, model.weights, model.expected_magnitudes)
if model.height < 64 or model.width < 64 or any(array.shape != (count,) for array in arrays):
raise ValueError("invalid phase-carrier model shapes")
if count == 0 or np.any(model.rows < 0) or np.any(model.rows >= model.height):
raise ValueError("invalid phase-carrier row indices")
if np.any(model.columns <= 0) or np.any(model.columns > model.width // 2):
raise ValueError("invalid phase-carrier column indices")
if np.any(model.channels < 0) or np.any(model.channels > 2):
raise ValueError("invalid phase-carrier channel indices")
if not np.isclose(np.sum(model.weights), 1.0, atol=1e-5) or np.any(model.weights < 0.0):
raise ValueError("invalid phase-carrier weights")
return model
@click.group()
def main() -> None:
"""Discover and evaluate an exact-geometry phase carrier."""
logging.basicConfig(level=logging.INFO, format="%(message)s")
@main.command()
@click.argument("positives", nargs=-1, required=True, type=click.Path(exists=True, dir_okay=False, path_type=Path))
@click.option("--peak-count", type=click.IntRange(min=1), default=256, show_default=True)
@click.option("--candidate-codebook", type=click.Path(exists=True, dir_okay=False, path_type=Path))
@click.option("--candidate-count", type=click.IntRange(min=1), default=16384, show_default=True)
@click.option("--model-out", type=click.Path(dir_okay=False, path_type=Path), required=True)
def discover(
positives: tuple[Path, ...],
peak_count: int,
candidate_codebook: Path | None,
candidate_count: int,
model_out: Path,
) -> None:
"""Learn a phase carrier from exact-geometry POSITIVES."""
candidate_bins: np.ndarray | None = None
if candidate_codebook is not None:
from synthid_v3_codebook_probe import load_v3_model
with Image.open(positives[0]) as first:
width, height = first.size
prior = load_v3_model(
candidate_codebook,
height=height,
width=width,
peak_count=candidate_count,
)
candidate_bins = np.column_stack((prior.rows, prior.columns, prior.channels))
model = discover_model(list(positives), peak_count=peak_count, candidate_bins=candidate_bins)
save_model(model_out, model)
log.info("Wrote phase-carrier model: %s", model_out)
@main.command()
@click.argument("model_path", type=click.Path(exists=True, dir_okay=False, path_type=Path))
@click.argument("images", nargs=-1, required=True, type=click.Path(exists=True, dir_okay=False, path_type=Path))
@click.option("--report-out", type=click.Path(dir_okay=False, path_type=Path), required=True)
@click.option("--canonicalize-geometry", is_flag=True, help="Resize inputs to the model geometry before scoring.")
@click.option("--max-shift", type=click.IntRange(min=0, max=MAX_TRANSLATION_SHIFT), default=0, show_default=True)
def score(
model_path: Path,
images: tuple[Path, ...],
report_out: Path,
canonicalize_geometry: bool,
max_shift: int,
) -> None:
"""Score IMAGES with MODEL_PATH."""
model = load_model(model_path)
scores = (
[asdict(score_image(image, model, canonicalize_geometry=canonicalize_geometry)) for image in images]
if max_shift == 0
else [
asdict(
score_translations(
image,
model,
max_shift=max_shift,
canonicalize_geometry=canonicalize_geometry,
)
)
for image in images
]
)
payload = {
"model": str(model_path),
"height": model.height,
"width": model.width,
"peak_count": len(model.rows),
"canonicalize_geometry": canonicalize_geometry,
"max_shift": max_shift,
"scores": scores,
}
report_out.parent.mkdir(parents=True, exist_ok=True)
report_out.write_text(json.dumps(payload, indent=2) + "\n", encoding="utf-8")
log.info("Wrote phase-carrier score report: %s", report_out)
if __name__ == "__main__":
main()