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# CLAUDE.md
This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
## Overview
This is an AI-powered penetration testing agent designed for defensive security analysis. The tool automates vulnerability assessment by combining external reconnaissance tools with AI-powered code analysis to identify security weaknesses in web applications and their source code.
## Commands
### Installation & Setup
```bash
npm install
```
### Running the Penetration Testing Agent
```bash
./shannon.mjs <WEB_URL> <REPO_PATH> --config <CONFIG_FILE>
```
Example:
```bash
./shannon.mjs "https://example.com" "/path/to/local/repo"
./shannon.mjs "https://juice-shop.herokuapp.com" "/home/user/juice-shop" --config juice-shop-config.yaml
```
### Alternative Execution
```bash
npm start <WEB_URL> <REPO_PATH> --config <CONFIG_FILE>
```
### Configuration Validation
```bash
# Configuration validation is built into the main script
./shannon.mjs --help # Shows usage and validates config on execution
```
### Generate TOTP for Authentication
```bash
./login_resources/generate-totp.mjs <TOTP_SECRET>
```
### Development Commands
```bash
# No linting or testing commands available in this project
# Development is done by running the agent in pipeline-testing mode
./shannon.mjs <commands> --pipeline-testing
```
### Session Management Commands
```bash
# Setup session without running
./shannon.mjs --setup-only <WEB_URL> <REPO_PATH> --config <CONFIG_FILE>
# Check session status (shows progress, timing, costs)
./shannon.mjs --status
# List all available agents by phase
./shannon.mjs --list-agents
# Show help
./shannon.mjs --help
```
### Execution Commands
```bash
# Run all remaining agents to completion
./shannon.mjs --run-all [--pipeline-testing]
# Run a specific agent
./shannon.mjs --run-agent <agent-name> [--pipeline-testing]
# Run a range of agents
./shannon.mjs --run-agents <start-agent>:<end-agent> [--pipeline-testing]
# Run a specific phase
./shannon.mjs --run-phase <phase-name> [--pipeline-testing]
# Pipeline testing mode (minimal prompts for fast testing)
./shannon.mjs <command> --pipeline-testing
```
### Rollback & Recovery Commands
```bash
# Rollback to specific checkpoint
./shannon.mjs --rollback-to <agent-name>
# Rollback and re-execute specific agent
./shannon.mjs --rerun <agent-name> [--pipeline-testing]
```
### Session Cleanup Commands
```bash
# Delete all sessions (with confirmation)
./shannon.mjs --cleanup
# Delete specific session by ID
./shannon.mjs --cleanup <session-id>
```
## Architecture & Components
### Main Entry Point
- `shannon.mjs` - Main orchestration script that coordinates the entire penetration testing workflow
### Core Modules
- `src/config-parser.js` - Handles YAML configuration parsing, validation, and distribution to agents
- `src/error-handling.js` - Comprehensive error handling with retry logic and categorized error types
- `src/tool-checker.js` - Validates availability of external security tools before execution
- `src/session-manager.js` - Manages persistent session state and agent lifecycle
- `src/checkpoint-manager.js` - Git-based checkpointing system for rollback capabilities
- Pipeline orchestration is built into the main `shannon.mjs` script
- `src/queue-validation.js` - Validates deliverables and agent prerequisites
### Five-Phase Testing Workflow
1. **Pre-Reconnaissance** (`pre-recon`) - External tool scans (nmap, subfinder, whatweb) + source code analysis
2. **Reconnaissance** (`recon`) - Analysis of initial findings and attack surface mapping
3. **Vulnerability Analysis** (5 agents)
- `injection-vuln` - SQL injection, command injection
- `xss-vuln` - Cross-site scripting
- `auth-vuln` - Authentication bypasses
- `authz-vuln` - Authorization flaws
- `ssrf-vuln` - Server-side request forgery
4. **Exploitation** (5 agents)
- `injection-exploit` - Exploit injection vulnerabilities
- `xss-exploit` - Exploit XSS vulnerabilities
- `auth-exploit` - Exploit authentication issues
- `authz-exploit` - Exploit authorization flaws
- `ssrf-exploit` - Exploit SSRF vulnerabilities
5. **Reporting** (`report`) - Executive-level security report generation
### Configuration System
The agent supports YAML configuration files with JSON Schema validation:
- `configs/config-schema.json` - JSON Schema for configuration validation
- `configs/example-config.yaml` - Template configuration file
- `configs/juice-shop-config.yaml` - Example configuration for OWASP Juice Shop
- `configs/keygraph-config.yaml` - Configuration for Keygraph applications
- `configs/chatwoot-config.yaml` - Configuration for Chatwoot applications
- `configs/metabase-config.yaml` - Configuration for Metabase applications
- `configs/cal-com-config.yaml` - Configuration for Cal.com applications
Configuration includes:
- Authentication settings (form, SSO, API, basic auth)
- Multi-factor authentication with TOTP support
- Custom login flow instructions
- Application-specific testing parameters
### Prompt Templates
The `prompts/` directory contains specialized prompt templates for each testing phase:
- `pre-recon-code.txt` - Initial code analysis prompts
- `recon.txt` - Reconnaissance analysis prompts
- `vuln-*.txt` - Vulnerability assessment prompts (injection, XSS, auth, authz, SSRF)
- `exploit-*.txt` - Exploitation attempt prompts
- `report-executive.txt` - Executive report generation prompts
### Claude Code SDK Integration
The agent uses the `@anthropic-ai/claude-code` SDK with maximum autonomy configuration:
- `maxTurns: 10_000` - Allows extensive autonomous analysis
- `permissionMode: 'bypassPermissions'` - Full system access for thorough testing
- Playwright MCP integration for web browser automation
- Working directory set to target local repository
- Configuration context injection for authenticated testing
### Authentication & Login Resources
- `login_resources/generate-totp.mjs` - TOTP token generation utility
- `login_resources/login_instructions.txt` - Login flow documentation
- Support for multi-factor authentication workflows
- Configurable authentication mechanisms (form, SSO, API, basic)
### Output & Deliverables
All analysis results are saved to the `deliverables/` directory within the target local repository, including:
- Pre-reconnaissance reports with external scan results
- Vulnerability assessment findings
- Exploitation attempt results
- Executive-level security reports with business impact analysis
### External Tool Dependencies
The agent integrates with external security tools:
- `nmap` - Network port scanning
- `subfinder` - Subdomain discovery
- `whatweb` - Web technology fingerprinting
Tools are validated for availability before execution using the tool-checker module.
### Git-Based Checkpointing System
The agent implements a sophisticated checkpoint system using git:
- Every agent creates a git checkpoint before execution
- Rollback to any previous agent state using `--rollback-to` or `--rerun`
- Failed agents don't affect completed work
- Timing and cost data cleaned up during rollbacks
- Fail-fast safety prevents accidental re-execution of completed agents
### Timing & Performance Monitoring
The agent includes comprehensive timing instrumentation that tracks:
- Total execution time
- Phase-level timing breakdown
- Individual command execution times
- Claude Code agent processing times
- Cost tracking for AI agent usage
## Development Notes
### Key Design Patterns
- **Configuration-Driven Architecture**: YAML configs with JSON Schema validation
- **Modular Error Handling**: Categorized error types with retry logic
- **Pure Functions**: Most functionality is implemented as pure functions for testability
- **SDK-First Approach**: Heavy reliance on Claude Code SDK for autonomous AI operations
- **Progressive Analysis**: Each phase builds on previous phase results
- **Local Repository Setup**: Target applications are accessed directly from user-provided local directories
### Error Handling Strategy
The application uses a comprehensive error handling system with:
- Categorized error types (PentestError, ConfigError, NetworkError, etc.)
- Automatic retry logic for transient failures
- Graceful degradation when external tools are unavailable
- Detailed error logging and user-friendly error messages
### Testing Mode
The agent includes a testing mode that skips external tool execution for faster development cycles.
### Security Focus
This is explicitly designed as a **defensive security tool** for:
- Vulnerability assessment
- Security analysis
- Penetration testing
- Security report generation
The tool should only be used on systems you own or have explicit permission to test.
## File Structure
```
shannon.mjs # Main orchestration script
package.json # Node.js dependencies
src/ # Core modules
├── config-parser.js # Configuration handling
├── error-handling.js # Error management
├── tool-checker.js # Tool validation
├── session-manager.js # Session state management
├── checkpoint-manager.js # Git-based checkpointing
├── queue-validation.js # Deliverable validation
└── utils/
configs/ # Configuration files
├── config-schema.json # JSON Schema validation
├── example-config.yaml # Template configuration
├── juice-shop-config.yaml # Juice Shop example
├── keygraph-config.yaml # Keygraph configuration
├── chatwoot-config.yaml # Chatwoot configuration
├── metabase-config.yaml # Metabase configuration
└── cal-com-config.yaml # Cal.com configuration
prompts/ # AI prompt templates
├── pre-recon-code.txt # Code analysis
├── recon.txt # Reconnaissance
├── vuln-*.txt # Vulnerability assessment
├── exploit-*.txt # Exploitation
└── report-executive.txt # Executive reporting
login_resources/ # Authentication utilities
├── generate-totp.mjs # TOTP generation
└── login_instructions.txt # Login documentation
deliverables/ # Output directory
```
## Troubleshooting
### Common Issues
- **"Agent already completed"**: Use `--rerun <agent>` for explicit re-execution
- **"Missing prerequisites"**: Check `--status` and run prerequisite agents first
- **"No sessions found"**: Create a session with `--setup-only` first
- **"Repository not found"**: Ensure target local directory exists and is accessible
- **"Too many test sessions"**: Use `--cleanup` to remove old sessions and free disk space
### External Tool Dependencies
Missing tools can be skipped using `--pipeline-testing` mode during development:
- `nmap` - Network scanning
- `subfinder` - Subdomain discovery
- `whatweb` - Web technology detection