* refactor: modularize claude-executor and extract shared utilities
- Extract message handling into src/ai/message-handlers.ts with pure functions
- Extract output formatting into src/ai/output-formatters.ts
- Extract progress management into src/ai/progress-manager.ts
- Add audit-logger.ts with Null Object pattern for optional logging
- Add shared utilities: formatting.ts, file-io.ts, functional.ts
- Consolidate getPromptNameForAgent into src/types/agents.ts
* feat: add Claude Code custom commands for debug and review
* feat: add Temporal integration foundation (phase 1-2)
- Add Temporal SDK dependencies (@temporalio/client, worker, workflow, activity)
- Add shared types for pipeline state, metrics, and progress queries
- Add classifyErrorForTemporal() for retry behavior classification
- Add docker-compose for Temporal server with SQLite persistence
* feat: add Temporal activities for agent execution (phase 3)
- Add activities.ts with heartbeat loop, git checkpoint/rollback, and error classification
- Export runClaudePrompt, validateAgentOutput, ClaudePromptResult for Temporal use
- Track attempt number via Temporal Context for accurate audit logging
- Rollback git workspace before retry to ensure clean state
* feat: add Temporal workflow for 5-phase pipeline orchestration (phase 4)
* feat: add Temporal worker, client, and query tools (phase 5)
- Add worker.ts with workflow bundling and graceful shutdown
- Add client.ts CLI to start pipelines with progress polling
- Add query.ts CLI to inspect running workflow state
- Fix buffer overflow by truncating error messages and stack traces
- Skip git operations gracefully on non-git repositories
- Add kill.sh/start.sh dev scripts and Dockerfile.worker
* feat: fix Docker worker container setup
- Install uv instead of deprecated uvx package
- Add mcp-server and configs directories to container
- Mount target repo dynamically via TARGET_REPO env variable
* fix: add report assembly step to Temporal workflow
- Add assembleReportActivity to concatenate exploitation evidence files before report agent runs
- Call assembleFinalReport in workflow Phase 5 before runReportAgent
- Ensure deliverables directory exists before writing final report
- Simplify pipeline-testing report prompt to just prepend header
* refactor: consolidate Docker setup to root docker-compose.yml
* feat: improve Temporal client UX and env handling
- Change default to fire-and-forget (--wait flag to opt-in)
- Add splash screen and improve console output formatting
- Add .env to gitignore, remove from dockerignore for container access
- Add Taskfile for common development commands
* refactor: simplify session ID handling and improve Taskfile options
- Include hostname in workflow ID for better audit log organization
- Extract sanitizeHostname utility to audit/utils.ts for reuse
- Remove unused generateSessionLogPath and buildLogFilePath functions
- Simplify Taskfile with CONFIG/OUTPUT/CLEAN named parameters
* chore: add .env.example and simplify .gitignore
* docs: update README and CLAUDE.md for Temporal workflow usage
- Replace Docker CLI instructions with Task-based commands
- Add monitoring/stopping sections and workflow examples
- Document Temporal orchestration layer and troubleshooting
- Simplify file structure to key files overview
* refactor: replace Taskfile with bash CLI script
- Add shannon bash script with start/logs/query/stop/help commands
- Remove Taskfile.yml dependency (no longer requires Task installation)
- Update README.md and CLAUDE.md to use ./shannon commands
- Update client.ts output to show ./shannon commands
* docs: fix deliverable filename in README
* refactor: remove direct CLI and .shannon-store.json in favor of Temporal
- Delete src/shannon.ts direct CLI entry point (Temporal is now the only mode)
- Remove .shannon-store.json session lock (Temporal handles workflow deduplication)
- Remove broken scripts/export-metrics.js (imported non-existent function)
- Update package.json to remove main, start script, and bin entry
- Clean up CLAUDE.md and debug.md to remove obsolete references
* chore: remove licensing comments from prompt files to prevent leaking into actual prompts
* fix: resolve parallel workflow race conditions and retry logic bugs
- Fix save_deliverable race condition using closure pattern instead of global variable
- Fix error classification order so OutputValidationError matches before generic validation
- Fix ApplicationFailure re-classification bug by checking instanceof before re-throwing
- Add per-error-type retry limits (3 for output validation, 50 for billing)
- Add fast retry intervals for pipeline testing mode (10s vs 5min)
- Increase worker concurrent activities to 25 for parallel workflows
* refactor: pipeline vuln→exploit workflow for parallel execution
- Replace sync barrier between vuln/exploit phases with independent pipelines
- Each vuln type runs: vuln agent → queue check → conditional exploit
- Add checkExploitationQueue activity to skip exploits when no vulns found
- Use Promise.allSettled for graceful failure handling across pipelines
- Add PipelineSummary type for aggregated cost/duration/turns metrics
* fix: re-throw retryable errors in checkExploitationQueue
* fix: detect and retry on Claude Code spending cap errors
- Add spending cap pattern detection in detectApiError() with retryable error
- Add matching patterns to classifyErrorForTemporal() for proper Temporal retry
- Add defense-in-depth safeguard in runClaudePrompt() for $0 cost / low turn detection
- Add final sanity check in activities before declaring success
* fix: increase heartbeat timeout to prevent false worker-dead detection
Original 30s timeout was from POC spec assuming <5min activities. With
hour-long activities and multiple concurrent workflows sharing one worker,
resource contention causes event loop stalls exceeding 30s, triggering
false heartbeat timeouts. Increased to 10min (prod) and 5min (testing).
* fix: temporal db init
* fix: persist home dir
* feat: add per-workflow unified logging with ./shannon logs ID=<workflow-id>
- Add WorkflowLogger class for human-readable, per-workflow log files
- Create workflow.log in audit-logs/{workflowId}/ with phase, agent, tool, and LLM events
- Update ./shannon logs to require ID param and tail specific workflow log
- Add phase transition logging at workflow boundaries
- Include workflow completion summary with agent breakdown (duration, cost)
- Mount audit-logs volume in docker-compose for host access
---------
Co-authored-by: ezl-keygraph <ezhil@keygraph.io>
Fixes responsibility gap where agents found vulnerabilities but rejected them as "out of scope"
Changes:
- vuln-injection.txt: Added LFI/RFI, SSTI, Path Traversal, Deserialization to scope
- Updated role definition and objective
- Added new vulnerability_type and slot_type enums
- Added sink definitions and defense rules for new injection classes
- Added witness payload examples
- pre-recon-code.txt: Expanded sink hunter agent to find file/template/deserialize sinks
- recon.txt: Updated Section 9 with clear injection source definitions for all types
- exploit-injection.txt: Updated evidence template to handle all injection types
Token-optimized: Condensed verbose sections while preserving critical guidance
Addresses XBEN benchmark failures where LFI/SSTI/Path Traversal were detected but excluded from exploitation queues
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Reduce prompts/pipeline-testing/report-executive.txt from 137 to 30 lines by:
- Removing hardcoded detailed vulnerability content
- Testing actual workflow (read → modify → save) instead of creating from scratch
- Removing meta-commentary, keeping only direct instructions
- Making it consistent with other pipeline testing prompts (30 lines like exploit agents)
The prompt now properly mimics the real reporting agent behavior where the orchestration code stitches files first, then the agent modifies the result.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
