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## Unified Audit System (v3.0)
- Implemented crash-safe, append-only logging to audit-logs/{hostname}_{sessionId}/
- Added session.json with comprehensive metrics (timing, cost, attempts)
- Agent execution logs with turn-by-turn detail
- Prompt snapshots saved to audit-logs/.../prompts/{agent}.md
- SessionMutex prevents race conditions during parallel execution
- Self-healing reconciliation before every CLI command
## Session Metadata Standardization
- Fixed critical bug: standardized on 'id' field (not 'sessionId') throughout codebase
- Updated: shannon.mjs (recon, report), src/phases/pre-recon.js
- Added validation in AuditSession to fail fast on incorrect field usage
- JavaScript shorthand syntax was causing wrong field names
## Schema Improvements
- session.json: Added cost_usd per phase, removed redundant final_cost_usd
- Renamed 'percentage' -> 'duration_percentage' for clarity
- Simplified agent metrics to single total_cost_usd field
- Removed unused validation object from schema
## Legacy System Removal
- Removed savePromptSnapshot() - prompts now only saved by audit system
- Removed target repo pollution (prompt-snapshots/ no longer created)
- Single source of truth: audit-logs/{hostname}_{sessionId}/prompts/
## Export Script Simplification
- Removed JSON export mode (session.json already exists)
- CSV-only export with clean columns: agent, phase, status, attempts, duration_ms, cost_usd
- Tested on real session data
## Documentation
- Updated CLAUDE.md with audit system architecture
- Added .gitignore entry for audit-logs/
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Co-Authored-By: Claude <noreply@anthropic.com>